Chr:
Chr12
Start:
25771130
End:
25776468
Strand:
-
Ref_name:
LOC9269655
Sequence
(XR_001541699.2):
ACUACAUCAUAGUAAGUACUACUCACUUUUGAUACAAAAUAUAAGAGAUUUUGGUUGGACGUAUAAAUUCGCAGUACUAUGAUGUGUCUCGUCUAACCAAAAUUUCAUAUAUUUUUUUACAAGAGAACUCACAUUUCAAAACGAGAGAUUAGUGUUUGGCAUGCAUAUAAUCUUCAUCAUACAUGUUCUGACAAGAUGACUGAAUUUCAAGUAUUUCCCCCCAUCUUUUUGCUUGAAUUUCACCAAUAGGGGUUGCAAAAUCGCAGGAGAAAAGCAGGACAUUUUGCAUAGUAAAGGCACAUCACUUCGUAAGCCCAAUUUUAAUGGGCCGACAUAAUGAUUCUGCGUAGGCCCAAUGAGCAAAUCGGCCCACUUAUCACUGACUUUUCUUACCUUAGCUUCUCGUCGCCGGCAGCCACGCCGCGGAGGCGGAGGCGCGGAGCUCGUCGCCGGCGAGGUCGUCGGGCGGUGCACCGGUAAACGACUCAACGACCCACACCAAAGGAGCGUCAGCUUUCUUCCCCCCAACCCACUCUCCGGCGACUAGCGGCGCCCACACCCUUCUCCGGCGACCCCCACCACCGCCGGCGGCGGCGGCGGCGGCGAUGGGAGUCAGGUCGGAUGUGGUACGGGAACCUCGCCUUCAGCAGCUCAGCUCUCCCCUUCCCUGCACGGCUUGUUGGCCUCACCGGAAUCGACGACCCCUACAAGUUCUUGCUGCUAGGAGUAUUGGAACAGAAAUGGAUAUGCUCCUGUGGACUGUGGUGAUUGUUUGGUGUGUUGCUUUUAUCUGAACUGCAAAUCUGAUGCAUGCAUUGCACUGAAAAAGAAAAUCUGAAACUACAGAGGAAUGUGCAAAAGGGUUUCACUUCUUUGUAUGAAGACUGGAAACUUGAGAAGAUGCAUGAUACUUGACCAAAGAACGGAAAAGAAGAAGAAUCAGAAUGUAUUGUACACUAGAUGCAGUUAAAUUAACAUGACAUGACACAGUUGAGGCGGAUGAUAAUACAAUUUGCUCUGGUUGGCAUAAAUUUGAACAGGUACAUCAACAACUGAUACAUAACCAAUGUCUCCCCAAAGGGGAAAAAAUAGUACUACAUACAUAGCAAAAAAGAAUUCACGACUUGUUAACUCUUAACCGCUGAUCGAUCUACACUGCCUACCGAAUUUAGACGUCAGUAAAAGGGAUGAUCUUAAAUUCCCCUUAAUGAUUAGGUAGCCAUCAUGAUCCAGCCUCUCAACUCAAUUGCAUCAGAGCCUUAUAUACAUAUCUUCAGAUUGACGGCAAUCAACUGGUGCCACCCUUGCUCUCAGACUUACUACAGUUGUCUGCAAUAUUUCAGGGACAAAAAAGAGACAGAUAUGUGAGUGAUAAGUCAAGUCAGAGAUGAACAAACAGUUGCAUUUAAGAACAGAGAAAUUCAGAGUUUCUGUGAUGCAGCUAUCCACGGAUCUACAAGAGAUAAAUGAUCAACUAGUCCGUGAAUUUGACACCGAUGGAUGCAGUGCAUGUAGCCGAGUGAAAUCAGCAAAGUAAACUCUAGCCUACAGUGCAUGACAAUGACAGGUUCUUGAGCUAACCAGAUCACAUUGUCUUUGCUGAAAGCAAACCUGUGUUCACACCCUCAGAUUUUAUUCAUCUUUAAAUUCCUUAGACUUUUCUGGCUCAUUUUACAGGGCAAUUUCAAAUAAAAUUUCAAGCGAAAAAAUGCAUAUAUUUAUUCUGUCUGAUUUUUCUUUUCCAACAUAUAGUACUACUGGAGGAUCAAUACCCCCGAAUUCUCAGGUAUUUCGUUCCGAAAUUUCAUAAUUCAUCCAUCCUAAAAUACAUUAACUUUUGACUACGAAUCUAGACAUGCACUUGGCUAGAUUCAUAGGUAAAAGUUGUUAUAUUUUAGGACAUAUGUAGUACUUGUACGAGGAUCGGAACCCGGAAAUUUCGGGUAUUUGGGUCGAAAUUUCAGGCCUUGAAGCAUUCUUUGUGGUACGAUACUAGUACUACUAGUAGACUAGUAGCAGAUCACUGAUUUUCAUUUUUGUUUCAUGUACAUUGACACUGAAAUGUGGAGUAGAUAGUACUUACACACCGUAUUUUUUGUGCAGAAUGUCGUCAGGAGUCAGCGGCUGCGCGGUUGCCUCCGGCCGGUGGCGGUGGCGGCGCCUCCGCCGUGUUCUGCUGCUGCUGAAGGUUCUUGGCCGCGGCGAGCUGGUAGAAGCUCAUCCCCUGCAGGCACGUGCUUUACUUACCAUCGGAGGCGGUGGCUGGAGGUGGUCGACGGCGAGGCAGCGGGCGUAGGGGUCGGCCAUGCUGACCACCGGCGAGCUCUGCACGGCGGCGGGCGGCGGCGCCAUGAACGGCGGCAUCCUCGGCAGGGACGCCAUGUGUGGUGGGCCCAUCCCGACGGCGCCCAUCCGCUGCAUGUACUGGUGCACGCCGGCCGCCGGGAACAUCACCGCCGGCGGCGCCAUUCCGCCGCCCAUCCACAUCAUCUGAACCACGCCAUUCACAUCAUCAUCGUCGGAUUAUCGUUAAUCAAUUUUAGUAUUGAGUUACAUUCAUUUUACGUAGUACAAACCUGUAGCUGGAGCUGCAGUGACUUGAGAUACUCGAUCGCUUCAUCCAGCAUCGAUGCUUUGUCCGUCUGAAAAUAUGAAACAAGAAUGAGGUCACCAUUUUCAAAUAAAUUCGAUUUAAAUUUUAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
10.37%
ME_num:
MEP:
59.15%
HE_num:
HEP:
30.28%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
2nd_leaf
Tau :
0.92
Avg Expression:
47.09
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 7h | -2.08768036314919 | 0.0391014630384329 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 2.22132199697146 | 0.000141202824864077 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 2.27138043284455 | 2.69990248319412e-05 |
| 4 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -1.27779836917116 | 0.000924985225662429 |
| 5 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h | -3.06324714681341 | 3.40202917386853e-06 |
| 6 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h | -2.57331883973928 | 7.09456170990937e-05 |
| 7 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -3.02447171297036 | 3.50396590441232e-07 |
| 8 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | -2.45622840360486 | 6.65166890210714e-05 |
| 9 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 1.95724360569891 | 0.00310541701670881 |
| 10 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | 1.89810727414971 | 0.039481871369238 |
| 11 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -2.06231761359598 | 8.96496962356584e-05 |
| 12 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -2.06238140224674 | 9.38103501783885e-05 |
| 13 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -2.06250235445775 | 9.01652395499585e-05 |
| 14 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.34850349864511 | 9.3204102606891e-07 |
| 15 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.66774124948056 | 3.42794601441533e-15 |
| 16 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -2.08782061743226 | 3.86026277506179e-08 |
| 17 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.67307012215809 | 2.08354923935138e-05 |