Chr:
Chr2
Start:
152799
End:
156042
Strand:
+
Ref_name:
LOC9269638
Sequence
(XR_001542847.2):
CAUCGCACGCGCUCGCUAUCCAACCGUCGACGCCGCUCCCCUCAUCCUUCGCCGCGCCCCCACCACGCCUUCACCGACCGCCACUCCUGCUCGCCCGAAUCGACGCCGCCGCCGUCGCGGGUCGACAUCGCCGCUCCUCCUAUCGCGCUCCUCCCCGCCGGCACUGCCUCCAUCCAUCCGCCGCGUCUCGCCGCCGGUCGCACCACCGAUCCAUUCCUCCUCCGCCGCCUGCUCUCCCGGUCCCUCCCGCCCCAUCGCCCCAACACCCCCCCCCCCCCCCGGCACCGCCUCCAUCCAUCCGCCGCGUCUCGCCGCCGGCCGCACCCCCGCUUCCAUCCAUCCACUGCAGAUCGCCAUCGCACGCCUCCGCCUCUCAAGGUCGCACGCUCAUCGCCGCCGCUCGUCGCCCGACACCCCGCCGAUUGGGGACCGGACGCUGACCCUGCAUCGACGCCACAACAGCCGACAGAUGGGAGAUGUUGAAGACCUCACUCCAACGACGGCUGCGCGCGGUGACACUACCAGGCGUUGAGGGAGAGAAUGCAGUGCGAGGUGCGACGGGGUUGUUCGUCCUUGCCCAGAUCAACGCCGCCGCCGAUCCCUCACUCGCCCCUCGCCCAGGUCGGUGCCAAGGGCGAGGUUCGCCAAUCUGCUUCCCAGCCGCCUCGCCCGCUCCAUGGGAGAGGUGACACCUGUGCCCGCCUCCAGCGCUCCAUGCCCCCGGAUACCAUCCGAGCACGAUCCCUCCGGCAGAACUUCUGCCGGAGAAGGGACGCAUGGUUAAUUGGUGUUCAACGAAAUGCUGCUUAGCCAAUGUAUUACCAGAAAUUGAUUUCUCUAGCGGACGAAAAUAAAAAAUGGAACGAUGCAGUGAAGAUUAUGUAAGCAAUGUUCGUGAUAUAUCGAUCCUGAAAUUCUCAUAGAUGGCCAUUGCACAAAUACAAAAAUUUGCAGCUCAAGAUGAACAACCACACCAACCCCAAGAUCACCAACUAAGCCUAUCCUGCUUCAUGAUUGUUGUUGCAAACUCCAACAUGCUUGCUGCUGGUGCAAUCUGAGCCGGCUGGUGGCAGAUGGGAGCCUGCCCUAUGUUGUUAGCAGCUUUUUUCACUCCAAGUCAUGCUUGCUGCCUGUGGUCUUGGUAGUUUCUUUUUUGUGUUGUCAAUUUAAUUAUUAGGAUUUCCCAUGUGCUCGGCUAUUGGUGUUCUUGUAUCUGUUUUGUUUCAGGGUGUCAUUACUAUGGAGUAGAUCAUAAUUUUUUUCUUAUUUUUUUCCAAUGCCUUGUAAAAUAACCAACUAGCAGGGAUGUUCAUAAAUUUCCCCCUUUUGUUUGGUUUUUUUCAGACAUAUAUAUAAUGAAGGCAUAUAUACACAAAAGGAGGAGCUGUUUGAGGGUCUAAAGGACAAUAGCUCAAUUGACUGGGAAGUUGUUGUCAUAUGUCGAGAGCAAUCUGCUAAAUGUUAAAGAGGUGCAUCUAACUUUUGUACCCAGUGAACUGCAAAUCUGCACCUUCUCUUUUGAUUAAUAGUUUCUUUGGAUUCAGAUCAAAAUAGCUCAACAUGGGAAUUUUUCUAGCAGAGGAUGGGCAAUUCUUGGAAAAUACUAUAUAUUUCUUGUCGUUGAAUGUGAUCAUGUCCCAUUAUUCUGGCACUUGCUGCCUUGAUUUUGUUGCCUGUGCCAGCCCUUUAGCUAGCUCUCUAUCACACACGAAUGCGUGACCCUUGAUGGUUGUAUGCAGUUGGGAUAUUUUGACUUUCGUUCUUUGGUUACUGGCGUGAGACGUGGGAGAAAGACGCUGAAGACAUCAAGCAUAACAUGGAGUUGAUAAAACAUCGUCGACUGAAUCAUGGACCUUGUCCUGGAUGUAGUUUCUUUGGCUGCUGGUUUAUUACACUAUAGUAAAACUAAGGACCUUGUAAUAGGCUCUUUGUGCUGGUCUGACGUGAAGUGAAAACCUUCUUAAUGUAACUUCGCUAAAAUUAGCGUUUUGUCUGUUUAAGCAGUAUUUAUGGUAUAAAGAAUUGCAUAUUGCAUUAUAUUGUGACAAAGAGUAUUUUCUGAAAUUU
Sequence
(XR_003240956.1):
CAUCGCACGCGCUCGCUAUCCAACCGUCGACGCCGCUCCCCUCAUCCUUCGCCGCGCCCCCACCACGCCUUCACCGACCGCCACUCCUGCUCGCCCGAAUCGACGCCGCCGCCGUCGCGGGUCGACAUCGCCGCUCCUCCUAUCGCGCUCCUCCCCGCCGGCACUGCCUCCAUCCAUCCGCCGCGUCUCGCCGCCGGUCGCACCACCGAUCCAUUCCUCCUCCGCCGCCUGCUCUCCCGGUCCCUCCCGCCCCAUCGCCCCAACACCCCCCCCCCCCCCCGGCACCGCCUCCAUCCAUCCGCCGCGUCUCGCCGCCGGCCGCACCCCCGCUUCCAUCCAUCCACUGCAGAUCGCCAUCGCACGCCUCCGCCUCUCAAGGUCGCACGCUCAUCGCCGCCGCUCGUCGCCCGACACCCCGCCGAUUGGGGACCGGACGCUGACCCUGCAUCGACGCCACAACAGCCGACAGAUGGGAGAUGUUGAAGACCUCACUCCAACGACGGCUGCGCGCGGUGACACUACCAGGCGUUGAGGGAGAGAAUGCAGUGCGAGGUGCGACGGGGUUGUUCGUCCUUGCCCAGAUCAACGCCGCCGCCGAUCCCUCACUCGCCCCUCGCCCAGGUCGGUGCCAAGGGCGAGGUUCGCCAAUCUGCUUCCCAGCCGCCUCGCCCGCUCCAUGGGAGAGGUGACACCUGUGCCCGCCUCCAGCGCUCCAUGCCCCCGGAUACCAUCCGAGCACGAUCCCUCCGGCAGAACUUCUGCCGGAGAAGGGACGCAUGGUUAAUUGGUGUUCAACGAAAUGCUGCUUAGCCAAUGUAUUACCAGAAAUUGAUUUCUCUAGCGGACGAAAAUAAAAAAUGGAACGAUGCAGUGAAGAUUAUGUAAGCAAUGUUCGUGAUAUAUCGAUCCUGAAAUUCUCAUAGAUGGCCAUUGCACAAAUACAAAAAUUUGCAGCUCAAGAUGAACAACCACACCAACCCCAAGAUCACCAACUAAGCCUAUCCUGCUUCAUGAUUGUUGUUGCAAACUCCAACAUGCUUGCUGCUGGUGCAAUCUGAGCCGGCUGGUGGCAGAUGGGAGCCUGCCCUAUGUUGUUAGCAGCUUUUUUCACUCCAAGUCAUGCUUGCUGCCUGUGGUCUUGGUAGUUUCUUUUUUGUGUUGUCAAUUUAAUUAUUAGGAUUUCCCAUGUGCUCGGCUAUUGGUGUUCUUGUAUCUGUUUUGUUUCAGGGUGUCAUUACUAUGGAGUAGAUCAUAAUUUUUUUCUUAUUUUUUUCCAAUGCCUUGUAAAAUAACCAACUAGCAGGGAUGUUCAUAAAUUUCCCCCUUUUGUUUGGUUUUUUUCAGACAUAUAUAUAAUGAAGGCAUAUAUACACAAAAGGAGGAGCUGUUUGAGGGUCUAAAGGACAAUAGCUCAAUUGACUGGGAAGUUGUUGUCAUAUGUCGAGAGCAAUCUGCUAAAUGUUAAAGAGAUCAAAAUAGCUCAACAUGGGAAUUUUUCUAGCAGAGGAUGGGCAAUUCUUGGAAAAUACUAUAUAUUUCUUGUCGUUGAAUGUGAUCAUGUCCCAUUAUUCUGGCACUUGCUGCCUUGAUUUUGUUGCCUGUGCCAGCCCUUUAGCUAGCUCUCUAUCACACACGAAUGCGUGACCCUUGAUGGUUGUAUGCAGUUGGGAUAUUUUGACUUUCGUUCUUUGGUUACUGGCGUGAGACGUGGGAGAAAGACGCUGAAGACAUCAAGCAUAACAUGGAGUUGAUAAAACAUCGUCGACUGAAUCAUGGACCUUGUCCUGGAUGUAGUUUCUUUGGCUGCUGGUUUAUUACACUAUAGUAAAACUAAGGACCUUGUAAUAGGCUCUUUGUGCUGGUCUGACGUGAAGUGAAAACCUUCUUAAUGUAACUUCGCUAAAAUUAGCGUUUUGUCUGUUUAAGCAGUAUUUAUGGUAUAAAGAAUUGCAUAUUGCAUUAUAUUGUGACAAAGAGUAUUUUCUGAAAUUU
Sequence
(XR_003240957.1):
CAUCGCACGCGCUCGCUAUCCAACCGUCGACGCCGCUCCCCUCAUCCUUCGCCGCGCCCCCACCACGCCUUCACCGACCGCCACUCCUGCUCGCCCGAAUCGACGCCGCCGCCGUCGCGGGUCGACAUCGCCGCUCCUCCUAUCGCGCUCCUCCCCGCCGGCACUGCCUCCAUCCAUCCGCCGCGUCUCGCCGCCGGUCGCACCACCGAUCCAUUCCUCCUCCGCCGCCUGCUCUCCCGGUCCCUCCCGCCCCAUCGCCCCAACACCCCCCCCCCCCCCCGGCACCGCCUCCAUCCAUCCGCCGCGUCUCGCCGCCGGCCGCACCCCCGCUUCCAUCCAUCCACUGCAGAUCGCCAUCGCACGCCUCCGCCUCUCAAGGUCGCACGCUCAUCGCCGCCGCUCGUCGCCCGACACCCCGCCGAUUGGGGACCGGACGCUGACCCUGCAUCGACGCCACAACAGCCGACAGAUGGGAGAUGUUGAAGACCUCACUCCAACGACGGCUGCGCGCGGUGACACUACCAGGCGUUGAGGGAGAGAAUGCAGUGCGAGGUGCGACGGGGUUGUUCGUCCUUGCCCAGAUCAACGCCGCCGCCGAUCCCUCACUCGCCCCUCGCCCAGGUCGGUGCCAAGGGCGAGGUUCGCCAAUCUGCUUCCCAGCCGCCUCGCCCGCUCCAUGGGAGAGGUGACACCUGUGCCCGCCUCCAGCGCUCCAUGCCCCCGGAUACCAUCCGAGCACGAUCCCUCCGGCAGAACUUCUGCCGGAGAAGGGACGCAUGGUUAAUUGGUGUUCAACGAAAUGCUGCUUAGCCAAUGUAUUACCAGAAAUUGAUUUCUCUAGCGGACGAAAAUAAAAAAUGGAACGAUGCAGUGAAGAUUAUGUAAGCAAUGUUCGUGAUAUAUCGAUCCUGAAAUUCUCAUAGAUGGCCAUUGCACAAAUACAAAAAUUUGCAGCUCAAGAUGAACAACCACACCAACCCCAAGAUCACCAACUAAGCCUAUCCUGCUUCAUGAUUGUUGUUGCAAACUCCAACAUGCUUGCUGCUGGUGCAAUCUGAGCCGGCUGGUGGCAGAUGGGAGCCUGCCCUAUGUUGUUAGCAGCUUUUUUCACUCCAAGUCAUGCUUGCUGCCUGUGGUCUUGACAUAUAUAUAAUGAAGGCAUAUAUACACAAAAGGAGGAGCUGUUUGAGGGUCUAAAGGACAAUAGCUCAAUUGACUGGGAAGUUGUUGUCAUAUGUCGAGAGCAAUCUGCUAAAUGUUAAAGAGGUGCAUCUAACUUUUGUACCCAGUGAACUGCAAAUCUGCACCUUCUCUUUUGAUUAAUAGUUUCUUUGGAUUCAGAUCAAAAUAGCUCAACAUGGGAAUUUUUCUAGCAGAGGAUGGGCAAUUCUUGGAAAAUACUAUAUAUUUCUUGUCGUUGAAUGUGAUCAUGUCCCAUUAUUCUGGCACUUGCUGCCUUGAUUUUGUUGCCUGUGCCAGCCCUUUAGCUAGCUCUCUAUCACACACGAAUGCGUGACCCUUGAUGGUUGUAUGCAGUUGGGAUAUUUUGACUUUCGUUCUUUGGUUACUGGCGUGAGACGUGGGAGAAAGACGCUGAAGACAUCAAGCAUAACAUGGAGUUGAUAAAACAUCGUCGACUGAAUCAUGGACCUUGUCCUGGAUGUAGUUUCUUUGGCUGCUGGUUUAUUACACUAUAGUAAAACUAAGGACCUUGUAAUAGGCUCUUUGUGCUGGUCUGACGUGAAGUGAAAACCUUCUUAAUGUAACUUCGCUAAAAUUAGCGUUUUGUCUGUUUAAGCAGUAUUUAUGGUAUAAAGAAUUGCAUAUUGCAUUAUAUUGUGACAAAGAGUAUUUUCUGAAAUUU
Sequence
(XR_003240958.1):
CAUCGCACGCGCUCGCUAUCCAACCGUCGACGCCGCUCCCCUCAUCCUUCGCCGCGCCCCCACCACGCCUUCACCGACCGCCACUCCUGCUCGCCCGAAUCGACGCCGCCGCCGUCGCGGGUCGACAUCGCCGCUCCUCCUAUCGCGCUCCUCCCCGCCGGCACUGCCUCCAUCCAUCCGCCGCGUCUCGCCGCCGGUCGCACCACCGAUCCAUUCCUCCUCCGCCGCCUGCUCUCCCGGUCCCUCCCGCCCCAUCGCCCCAACACCCCCCCCCCCCCCCGGCACCGCCUCCAUCCAUCCGCCGCGUCUCGCCGCCGGCCGCACCCCCGCUUCCAUCCAUCCACUGCAGAUCGCCAUCGCACGCCUCCGCCUCUCAAGGUCGCACGCUCAUCGCCGCCGCUCGUCGCCCGACACCCCGCCGAUUGGGGACCGGACGCUGACCCUGCAUCGACGCCACAACAGCCGACAGAUGGGAGAUGUUGAAGACCUCACUCCAACGACGGCUGCGCGCGGUGACACUACCAGGCGUUGAGGGAGAGAAUGCAGUGCGAGGUGCGACGGGGUUGUUCGUCCUUGCCCAGAUCAACGCCGCCGCCGAUCCCUCACUCGCCCCUCGCCCAGGUCGGUGCCAAGGGCGAGGUUCGCCAAUCUGCUUCCCAGCCGCCUCGCCCGCUCCAUGGGAGAGGUGACACCUGUGCCCGCCUCCAGCGCUCCAUGCCCCCGGAUACCAUCCGAGCACGAUCCCUCCGGCAGAACUUCUGCCGGAGAAGGGACGCAUGGUUAAUUGAGCGGACGAAAAUAAAAAAUGGAACGAUGCAGUGAAGAUUAUGUAAGCAAUGUUCGUGAUAUAUCGAUCCUGAAAUUCUCAUAGAUGGCCAUUGCACAAAUACAAAAAUUUGCAGCUCAAGAUGAACAACCACACCAACCCCAAGAUCACCAACUAAGCCUAUCCUGCUUCAUGAUUGUUGUUGCAAACUCCAACAUGCUUGCUGCUGGUGCAAUCUGAGCCGGCUGGUGGCAGAUGGGAGCCUGCCCUAUGUUGUUAGCAGCUUUUUUCACUCCAAGUCAUGCUUGCUGCCUGUGGUCUUGGUAGUUUCUUUUUUGUGUUGUCAAUUUAAUUAUUAGGAUUUCCCAUGUGCUCGGCUAUUGGUGUUCUUGUAUCUGUUUUGUUUCAGGGUGUCAUUACUAUGGAGUAGAUCAUAAUUUUUUUCUUAUUUUUUUCCAAUGCCUUGUAAAAUAACCAACUAGCAGGGAUGUUCAUAAAUUUCCCCCUUUUGUUUGGUUUUUUUCAGACAUAUAUAUAAUGAAGGCAUAUAUACACAAAAGGAGGAGCUGUUUGAGGGUCUAAAGGACAAUAGCUCAAUUGACUGGGAAGUUGUUGUCAUAUGUCGAGAGCAAUCUGCUAAAUGUUAAAGAGGUGCAUCUAACUUUUGUACCCAGUGAACUGCAAAUCUGCACCUUCUCUUUUGAUUAAUAGUUUCUUUGGAUUCAGAUCAAAAUAGCUCAACAUGGGAAUUUUUCUAGCAGAGGAUGGGCAAUUCUUGGAAAAUACUAUAUAUUUCUUGUCGUUGAAUGUGAUCAUGUCCCAUUAUUCUGGCACUUGCUGCCUUGAUUUUGUUGCCUGUGCCAGCCCUUUAGCUAGCUCUCUAUCACACACGAAUGCGUGACCCUUGAUGGUUGUAUGCAGUUGGGAUAUUUUGACUUUCGUUCUUUGGUUACUGGCGUGAGACGUGGGAGAAAGACGCUGAAGACAUCAAGCAUAACAUGGAGUUGAUAAAACAUCGUCGACUGAAUCAUGGACCUUGUCCUGGAUGUAGUUUCUUUGGCUGCUGGUUUAUUACACUAUAGUAAAACUAAGGACCUUGUAAUAGGCUCUUUGUGCUGGUCUGACGUGAAGUGAAAACCUUCUUAAUGUAACUUCGCUAAAAUUAGCGUUUUGUCUGUUUAAGCAGUAUUUAUGGUAUAAAGAAUUGCAUAUUGCAUUAUAUUGUGACAAAGAGUAUUUUCUGAAAUUU
Sequence
(XR_003240959.1):
CAUCGCACGCGCUCGCUAUCCAACCGUCGACGCCGCUCCCCUCAUCCUUCGCCGCGCCCCCACCACGCCUUCACCGACCGCCACUCCUGCUCGCCCGAAUCGACGCCGCCGCCGUCGCGGGUCGACAUCGCCGCUCCUCCUAUCGCGCUCCUCCCCGCCGGCACUGCCUCCAUCCAUCCGCCGCGUCUCGCCGCCGGUCGCACCACCGAUCCAUUCCUCCUCCGCCGCCUGCUCUCCCGGUCCCUCCCGCCCCAUCGCCCCAACACCCCCCCCCCCCCCCGGCACCGCCUCCAUCCAUCCGCCGCGUCUCGCCGCCGGCCGCACCCCCGCUUCCAUCCAUCCACUGCAGAUCGCCAUCGCACGCCUCCGCCUCUCAAGGUCGCACGCUCAUCGCCGCCGCUCGUCGCCCGACACCCCGCCGAUUGGGGACCGGACGCUGACCCUGCAUCGACGCCACAACAGCCGACAGAUGGGAGAUGUUGAAGACCUCACUCCAACGACGGCUGCGCGCGGUGACACUACCAGGCGUUGAGGGAGAGAAUGCAGUGCGAGGUGCGACGGGGUUGUUCGUCCUUGCCCAGAUCAACGCCGCCGCCGAUCCCUCACUCGCCCCUCGCCCAGGUCGGUGCCAAGGGCGAGGUUCGCCAAUCUGCUUCCCAGCCGCCUCGCCCGCUCCAUGGGAGAGGUGACACCUGUGCCCGCCUCCAGCGCUCCAUGCCCCCGGAUACCAUCCGAGCACGAUCCCUCCGGCAGAACUUCUGCCGGAGAAGGGACGCAUGGUUAAUUGGUGUUCAACGAAAUGCUGCUUAGCCAAUGUAUUACCAGAAAUUGAUUUCUCUAGCGGACGAAAAUAAAAAAUGGAACGAUGCAGUGAAGAUUAUGUAAGCAAUGUUCGUGAUAUAUCGAUCCUGAAAUUCUCAUAGAUGGCCAUUGCACAAAUACAAAAAUUUGCAGCUCAAGAUGAACAACCACACCAACCCCAAGAUCACCAACUAAGCCUAUCCUGCUUCAUGAUUGUUGUUGCAAACUCCAACAUGCUUGCUGCUGGUGCAAUCUGAGCCGGCUGGUGGCAGAUGGGAGCCUGCCCUAUGUUGUUAGCAGCUUUUUUCACUCCAAGUCAUGCUUGCUGCCUGUGGUCUUGACAUAUAUAUAAUGAAGGCAUAUAUACACAAAAGGAGGAGCUGUUUGAGGGUCUAAAGGACAAUAGCUCAAUUGACUGGGAAGUUGUUGUCAUAUGUCGAGAGCAAUCUGCUAAAUGUUAAAGAGAUCAAAAUAGCUCAACAUGGGAAUUUUUCUAGCAGAGGAUGGGCAAUUCUUGGAAAAUACUAUAUAUUUCUUGUCGUUGAAUGUGAUCAUGUCCCAUUAUUCUGGCACUUGCUGCCUUGAUUUUGUUGCCUGUGCCAGCCCUUUAGCUAGCUCUCUAUCACACACGAAUGCGUGACCCUUGAUGGUUGUAUGCAGUUGGGAUAUUUUGACUUUCGUUCUUUGGUUACUGGCGUGAGACGUGGGAGAAAGACGCUGAAGACAUCAAGCAUAACAUGGAGUUGAUAAAACAUCGUCGACUGAAUCAUGGACCUUGUCCUGGAUGUAGUUUCUUUGGCUGCUGGUUUAUUACACUAUAGUAAAACUAAGGACCUUGUAAUAGGCUCUUUGUGCUGGUCUGACGUGAAGUGAAAACCUUCUUAAUGUAACUUCGCUAAAAUUAGCGUUUUGUCUGUUUAAGCAGUAUUUAUGGUAUAAAGAAUUGCAUAUUGCAUUAUAUUGUGACAAAGAGUAUUUUCUGAAAUUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
0
LEP:
0.0%
ME_num:
MEP:
50.0%
HE_num:
HEP:
49.8%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.59
Avg Expression:
11.34
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | -1.16604512738194 | 0.0047465570748412 |
| 2 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.56361849518079 | 0.0161162533021077 |
| 3 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.56369304425668 | 0.0164990891732574 |
| 4 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.56380777604335 | 0.0161548688295303 |
| 5 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.09560305880468 | 0.00012911957186505 |