Chr:
Chr7
Start:
14764306
End:
14767056
Strand:
+
Ref_name:
LOC9269557
Sequence
(XR_001547332.2):
CGAGAGCAAGGGCGAAUGGCAGCGUGGAUGCAACGCGUGCAGGCGCGGCAGCCCAGCGUAGCGUCGGCGCACCGUGGCAUCCUGGUAUACUACUGCUAUUCCAUUCAAGUGGCGGUGCAUCUUUCUCCUCCUCCCUACCAGAGAAUUUGUUCGAAUUUGGCUCUUCGAGUUCCCAACUAUAAAGGAUGAUGUUUUUCUUGGCCAGAUUAGUGUUUCUCUCCUCUCCUAGCCACGAGGGGAGGAGGGAGAACAGAUUGUAAGCAGCAAGUUGAGCAGCAAAGACAACCGAUGCAGUGGCGUGGAGUUCGAGUUUGACAGUUCGGUGCCCAAUCCAGGGUUGCAGUGCUGGAACAAGGCAGAGUAGUUGCUUUGUCUUUGUUUUUCUUUGUAUGUUGCAAAUUCGCAUCACAUCAAAGUACGCAUCAGUAUGAUCUCAGGAUUCUAUGGAUGAGAGUACACAUCAAUAUGCUCUCUGGGGAUGAGCCACAUGAUCUUGGGAUCAGAUUCAUCUGAGCAACACAAGAUCUUGGCUAAUUGGUGUAUAUUUUUGAUAGCUUUUUUUUUUGAAGGGAGAUUUUUGAUAGCUUAUUAAUACUGAACAUCUGGAUAUAUGCCUUAUAAGAGCGAGGAAACUUAAGUCUAUGGCUUGAGCUAAUAAAGAUUGUAGGUUUUUAGAGUAGGAACAAGGUUAGCAUUUCUGUCAUUUUAUUAUACACGCGUUGUUCUUUUUGGACGUGAGAUUUAGUUGUCUGUUUGUCAGUCAAUGGACUAAAAUAAUGUAAACUAGGCAUAUAACAACCAUUUAAAUUUAUGGAUUUAUGGUUUGAUGCAAUUUAGCACAUGCUAGGUCCUCUUCUCAAAUUAGUAGGAGUUUAGGACAAAGUAUAAUGGUGCUACCUUACUCAUAUUAUACUGGAUUGUCAGAAUCAGUUGGGCCAUUCAUUGGCUCCUCCUCCCCUCCUCUAUGCUCACUUUGUCAUGCUCUGUAGCGGUGGUGGCGUCAUAUCAGAGAUGGAGCAAGAAUUGUUGCCGCACUGAAUGCUCCAUAAUGCAAGAAAACCAGUAUAGAGAAGCCAGAUACAUCCGCAUAAAGCAAAGACAAACAUAGCUUAUUUUGUCGGCUUAUAACUAUGUUAGUUUUGCAGUUUUUGGUUAGAGCUUUGCUUUUUGUGAUAACUCUGUUCUUUUGCAGAGUAGAUGAAUAUAAGCCUGUAGUCUGUGAUCUAUGUGUACACAUAACCUCUUUUUUUAAAAAAUUCUCAUAAUAUGGAUCCAAAUUUCAUAAGCUAUAAGAAUUAUUGAUAAUAUUCCUGAAGCUUUUGUUCUGGCUUGCUACUCAUUUAAUAGAAGUUGUCUUCCAUUGCCUGAGUGCUCGACUAUAAAGAACCUAAAUAUUAGUUCUUAUCAACCUGUGACAUUGUAGUGAUUUUGUGCUAGCUGAUGAAUAGUGGAUAGUAGCAAUGUAGUUUAAUUUCAGGAAGGAAAAGAGUGAUGCAUAGGGAAGGAAAACCUUUGUUCAAAAUAAAUAUAUAUCAUUAGAUUUCUCAAAACCUUGCUGUUUUGUGUUCUGCUAUUCAUUCAGCAUUUUAGCUAAAGGCCUAAUUUUUAUAACCAAACUAUGAUUACGACGUUGCAAUUUUCCGUUAGUUUUAUUGUUGCAUGUACAUUGGGUAAGCACUCGCCUUACAAUGUGGGGUGCACUCUCCUGCAGUGGAUUUGCCUCGCCUGUGCUUGCAUGUGCUUCAUUCUAUGCAGGUAGAACAAGAAGAUCCAGCUUCUACACAGGUAGUAUAUGUGUGCCUAUAACUUUGCUGUAAUCACCUCAGUGAGUAGUCUGCUGAUCCAUCUUUUUGUUCAACUGUGGCAAUGGCUGCGGGUAAGCCUUUUAGAUAUUGAUUUGUCAAAAUAAACUGACACAAGCUUUCAGAGAUGUGUGAUUUCAUAUUUUCCAUGAUAAAAAAUAAUGUUAUUUCCAUUGCUUCAAAGAUAUACUAUAUGUUGUGUGUUAAUUCCCUUUGCUUCAAAGUUUCUUCAGAUAAAGCUGCAUGAAGAUGAAAAGACAUUUUAUUCAGUACUAUCGGUUACUUUACAUUUAUUUAUGCCAUGCUUUUUUUAUUGGUUCAGGAAGAUGUACACAGUACACUGAUCUGGUGGAGAAGAACACCACAACCACCUCAGCUAACAUGUUCCUUUGUUGCACCUGAAAAGGGAUAAUUCGCAUAUAUUUCAUCUUAAAAAGAAACUGAGCUGAAGAAACUUAUGAAUCAGAUAACAUUUUUUCUAGGCCUGAAUUUGUCUGCUUAAUUUUGCAGGCACGGCGAAGCAGCGUUGGAGGUGGCUGCUGGCUCCUAUGAUGUUGCCCAUGUCUCCUGCUACAAGUGCAACCGGUGCAACUGCUAAUGUUAAGAGAUUAUUGACUGUAGCAAGCACCAACGUGCCUAUCUGGGAUGAAGUGAUGAAUAAAUAAAAGAGGCCAUCCAGUGUGACGGUUCAAUCUCUGUAUAUUUGGCUGUUGAUAAUUACUGGUCAUCUUGCCAGUGUGCCCUGUGUAAUGUUGUUCAGUGAAAUAUAAGAUAAUUUGUUUAUGAGUUUCCCUCUCAUUAUCUUUUGUUUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
7.52%
ME_num:
MEP:
66.06%
HE_num:
HEP:
26.22%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.76
Avg Expression:
17.68
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -2.12063461990388 | 1.23557196015916e-16 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.62567744715794 | 6.43058063276935e-17 |
| 3 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 1.98989333777778 | 0.0122133390189243 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.08272584171394 | 3.92818582396963e-28 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.46278163950882 | 1.43141339878143e-17 |