RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC9269405

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr8

Start:

5773798

End:

5776592

Strand:

-

Ref_name:

LOC9269405

Sequence
(XR_001548096.2):

GAUGGAUCCCAUCCCGCACGGCUGCGCAAUUCCCCCACGCAUCGCUGCAUUGGGGCGAGAGGGGAACCGAGCUAGGGUUUCACCUCCCCCGCCCGCCUCCUCCUCCUUACCGCGCGAACCGACCCGACCCCCGCUUCGCCGCUGCCGCAGCCGUGAUGGGGACGGAGCGGAAGCGCAUGGUGAGCCUCUUCGACGUGGUCGAUGAGAGCUCCGUCUCUACCAAGCUCGGCCACGCCGGCACCACCAACAGCACCGCCACCGCCGCGGCCAACCCGUCCAUCAAUUGGUGGACGGGGAGGCCCUACUCGGCAAGGUACCUCGAGAUCCUCUAGAAGCACCGCACGCUCCCCGUGUGGCAGCAGAAGGACGAUUUCCUCGCCGUCCUCCGUGACAACCAGACCCUCAUCCUCGUCGGAGAAACCGGAAGCAGCAAGACCACUCAGUACAGGGGAGCGGUGCUCCGGUAGGCCUCUCAUCGAGUUGUCUGAAUUCCCGGGCCUCCGCUCAUCCGCCACCACGCGUGUUCCAUGGAGCAUGAGCUCCUCUUUAGGGUUUCAGUACGGAGUAGAGUAAGUGUGUUCCGGCCACUGCCGUCAUUGCCUUCCACGGGACAGUCAGCUCCAGCAAGCGGAUAUAGAUCUGCAUUUUCAUCCGCAACAGCGCUUUAUCUGGUCUGACUCUAUUCAUUUUGUUGUCAAUUGGUUGGUUUCGCCAUCGUUUACUCUACAACAGAUGAUUUCCAUGGCCAUUGUUUCAUCCACAGGAAAAUUCAUGGACGGUUUACAAUGUAAAUUUAAUGUUGGGUGGUGUCUUAUCUUGACCAAACUGUGUUUUGAUAUAUAUGGUGCAGUGACUUUGUGAGCAGCUCAGUUUAAUAGAACCAAGUCUUAUAGGUAAGAUGGUUGAUCUCAAUCAUUGUUUCAAAUUGAUUGCCUACAACUCUUUGAAAUAGAAGGUAAAUUAACCAUACACUCGUCUACUAUAUAUGUUUGUGUAUGUCAUAUACUUGAUGAAAUGCUUGAUGGACUUAGCCCGUCGGUAUGCAUUAUUAGUUAAGUACUCAAAACUACACACUGCUGUCACUUAAUUUUAGAUUUCUCAUCACGUUCAGUUACAUAAGAGUCAGGCCUUAAAGGAUAUGGCAGCUAUUAACUGUAUAAUAUUUUGUCCCAAAUGGUUCAGUUCUAGAGCACUUAAAGAUGGCUAUUGCAGGUAUUAUAGGCCAGCACAAAGUUUGUUGGUGUUAUCUCUUUGUUGCUUGCAGUAUACUCAUAUCACAUUGAAGCCAAGUUAUGCUAUGUAUUACGUUGAUUUGGUCAUGAAAUUUUUCUCUCAAUUCAGGAAGCAUUUUUAUCCAACGAUGUAUGCACCUUCUCUGCUAAACAACUAUGCAGUGGAUGUGUUCAUGAUUGUUUUCUUCUGAUCCUAGCACAUUCCCUGAGAUAUCCUUCAAGAAUGAUGACUUCAAAUUCAUCGCGUGCCUUUUUUCCUCUCUCAUAUUUACAUUGUUAUGCCUAGGACAAUAGCUUCAGUUUAACAGUGUACCUCGCUGCUUGAUAAUUGCGAUGGAGUAUCAUAUCAUGACACACAAGGAUCUUUCGUUGGGUGCUGUGUACAAUUAUUGUUACCGAGGCCUUUGAAGGUAUUACAGUAAUAUAUUGUUACAUCUCCUUCACCGGGCUUCUAUACUAGAGAUCCUCCUAUUACUAUUUUAGUUCUUUUUAAACCAGACAACCUGAUUAGUUAUUCUUACUUAUCUUUUUAUACAAGAUUUUUUUUGACAAAAUUAUAUUUGCACCAUCAGAUGUAAAAUGCCAACUUUGUUCAAGCUCCCCUGAGCCAUAUACCAUAUAUUCAUGUUUUGCUUGAUUUCUA

Sequence
(XR_003243711.1):

GAUGGAUCCCAUCCCGCACGGCUGCGCAAUUCCCCCACGCAUCGCUGCAUUGGGGCGAGAGGGGAACCGAGCUAGGGUUUCACCUCCCCCGCCCGCCUCCUCCUCCUUACCGCGCGAACCGACCCGACCCCCGCUUCGCCGCUGCCGCAGCCGUGAUGGGGACGGAGCGGAAGCGCAUGGUGAGCCUCUUCGACGUGGUCGAUGAGAGCUCCGUCUCUACCAAGCUCGGCCACGCCGGCACCACCAACAGCACCGCCACCGCCGCGGCCAACCCGUCCAUCAAUUGGUGGACGGGGAGGCCCUACUCGGCAAGGUACCUCGAGAUCCUCUAGAAGCACCGCACGCUCCCCGUGUGGCAGCAGAAGGACGAUUUCCUCGCCGUCCUCCGUGACAACCAGACCCUCAUCCUCGUCGGAGAAACCGGAAGCAGCAAGACCACUCAGUACAGGGGAGCGGUGCUCCGGUAGGCCUCUCAUCGAGUUGUCUGAAUUCCCGGGCCUCCGCUCAUCCGCCACCACGCGUGUUCCAUGGAGCAUGAGCUCCUCUUUAGGGUUUCAGUACGGAGUAGAGUAAGUGUGUUCCGGCCACUGCCGUCAUUGCCUUCCACGGGACAGUCAGCUCCAGCAAGCGGAUAUAGAUCUGCAUUUUCAUCCGCAACAGCGCUUUAUCUGGUCUGACUCUAUUCAUUUUGUUGUCAAUUGGUUGGUUUCGCCAUCGUUUACUCUACAACAGAUGAUUUCCAUGGCCAUUGUUUCAUCCACAGGAAAAUUCAUGGACGGUUUACAAUGUAAAUUUAAUGUUGGGUGGUGUCUUAUCUUGACCAAACUGUGUUUUGAUAUAUAUGGUGCAGUGACUUUGUGAGCAGCUCAGUUUAAUAGAACCAAGUCUUAUAGGUAAGAUGGUUGAUCUCAAUCAUUGUUUCAAAUUGAUUGCCUACAACUCUUUGAAAUAGAAGGUAAAUUAACCAUACACUCGUCUACUAUAUAUGUUUGUGUAUGUCAUAUACUUGAUGAAAUGCUUGAUGGACUUAGCCCGUCGGUAUGCAUUAUUAGUUAAGUACUCAAAACUACACACUGCUGUCACUUAAUUUUAGAUUUCUCAUCACGUUCAGUUACAUAAGAGUCAGGCCUUAAAGGAUAUGGCAGCUAUUAACUGUAUAAUAUUUUGUCCCAAAUGGUUCAGUUCUAGAGCACUUAAAGAUGGCUAUUGCAGGUAUUAUAGGCCAGCACAAAGUUUGUUGGUGUUAUCUCUUUGUUGCUUGCAGUAUACUCAUAUCACAUUGAAGCCAAGUUAUGCUAUGUAUUACGUUGAUUUGGUCAUGAAAUUUUUCUCUCAAUUCAGGAAGCAUUUUUAUCCAACGAUGUAUGCACCUUCUCUGCUAAACAACUAUGCAGUGGAUGUGUUCAUGAUUGUUUUCUUCUGAUCCUAGCACAUUCCCUGAGAUAUCCUUCAAGAAUGAUGACUUCAAAUUCAUCGCGUGCCUUUUUUCCUCUCUCAUAUUUACAUUGUUAUGCCUAGGACAAUAGCUUCAGUUUAACAGUGUACCUCGCUGCUUGAUAAUUGCGAUGGGUAAGAUACUAUCAGUAAAAUGUGAAUCUAUUAUGUCCUUGAGAUUCUUCAUAUGGUUAUCCUCAACUGCUAACUUCUACUCCCUCCGUCCCACAAUAUAAGGGAUUUUGAGUUUUUGCUUGUAACAUUUGAUCACUCGUCUUAUUCAAUUUUUUUUUACAAAUAUAAAAAACGAAAAGUUGUGCUUAUAGUACUGUAGAUAAUAAAGUAAGUCACAAUUAAAAUAAAUAAUAAUUUCAAAAAAUUUUAAAUAAGACGAGUGGUUAAACAUUAUAAGAAAAACUCAAAAUCCCUUAUAUUAUGGGACGGAGGGAGUAUGAUUUAAUCUGUGCGCUGCUGCUUUUCAUGUCUCUGCAAAUGCAGAUGUAUUGAUGUGACCUUCAAUCUCCAUGCAGAGUAUCAUAUCAUGACACACAAGGAUCUUUCGUUGGGUGCUGUGUACAAUUAUUGUUACCGAGGCCUUUGAAGGUAUUACAGUAAUAUAUUGUUACAUCUCCUUCACCGGGCUUCUAUACUAGAGAUCCUCCUAUUACUAUUUUAGUUCUUUUUAAACCAGACAACCUGAUUAGUUAUUCUUACUUAUCUUUUUAUACAAGAUUUUUUUUGACAAAAUUAUAUUUGCACCAUCAGAUGUAAAAUGCCAACUUUGUUCAAGCUCCCCUGAGCCAUAUACCAUAUAUUCAUGUUUUGCUUGAUUUCUA

Sequence
(XR_003243712.1):

GAUGGAUCCCAUCCCGCACGGCUGCGCAAUUCCCCCACGCAUCGCUGCAUUGGGGCGAGAGGGGAACCGAGCUAGGGUUUCACCUCCCCCGCCCGCCUCCUCCUCCUUACCGCGCGAACCGACCCGACCCCCGCUUCGCCGCUGCCGCAGCCGUGAUGGGGACGGAGCGGAAGCGCAUGGUGAGCCUCUUCGACGUGGUCGAUGAGAGCUCCGUCUCUACCAAGCUCGGCCACGCCGGCACCACCAACAGCACCGCCACCGCCGCGGCCAACCCGUCCAUCAAUUGGUGGACGGGGAGGCCCUACUCGGCAAGGUACCUCGAGAUCCUCUAGAAGCACCGCACGCUCCCCGUGUGGCAGCAGAAGGACGAUUUCCUCGCCGUCCUCCGUGACAACCAGACCCUCAUCCUCGUCGGAGAAACCGGAAGCAGCAAGACCACUCAGUACAGGGGAGCGGUGCUCCGGUAGGCCUCUCAUCGAGUUGUCUGAAUUCCCGGGCCUCCGCUCAUCCGCCACCACGCGUGUUCCAUGGAGCAUGAGCUCCUCUUUAGGGUUUCAGUACGGAGUAGAGUAAGUGUGUUCCGGCCACUGCCGUCAUUGCCUUCCACGGGACAGUCAGCUCCAGCAAGCGGAUAUAGAUCUGCAUUUUCAUCCGCAACAGCGCUUUAUCUGGAAAAUUCAUGGACGGUUUACAAUGUAAAUUUAAUGUUGGGUGGUGUCUUAUCUUGACCAAACUGUGUUUUGAUAUAUAUGGUGCAGUGACUUUGUGAGCAGCUCAGUUUAAUAGAACCAAGUCUUAUAGGUAAGAUGGUUGAUCUCAAUCAUUGUUUCAAAUUGAUUGCCUACAACUCUUUGAAAUAGAAGGUAAAUUAACCAUACACUCGUCUACUAUAUAUGUUUGUGUAUGUCAUAUACUUGAUGAAAUGCUUGAUGGACUUAGCCCGUCGGUAUGCAUUAUUAGUUAAGUACUCAAAACUACACACUGCUGUCACUUAAUUUUAGAUUUCUCAUCACGUUCAGUUACAUAAGAGUCAGGCCUUAAAGGAUAUGGCAGCUAUUAACUGUAUAAUAUUUUGUCCCAAAUGGUUCAGUUCUAGAGCACUUAAAGAUGGCUAUUGCAGGUAUUAUAGGCCAGCACAAAGUUUGUUGGUGUUAUCUCUUUGUUGCUUGCAGUAUACUCAUAUCACAUUGAAGCCAAGUUAUGCUAUGUAUUACGUUGAUUUGGUCAUGAAAUUUUUCUCUCAAUUCAGGAAGCAUUUUUAUCCAACGAUGUAUGCACCUUCUCUGCUAAACAACUAUGCAGUGGAUGUGUUCAUGAUUGUUUUCUUCUGAUCCUAGCACAUUCCCUGAGAUAUCCUUCAAGAAUGAUGACUUCAAAUUCAUCGCGUGCCUUUUUUCCUCUCUCAUAUUUACAUUGUUAUGCCUAGGACAAUAGCUUCAGUUUAACAGUGUACCUCGCUGCUUGAUAAUUGCGAUGGGUAAGAUACUAUCAGUAAAAUGUGAAUCUAUUAUGUCCUUGAGAUUCUUCAUAUGGUUAUCCUCAACUGCUAACUUCUACUCCCUCCGUCCCACAAUAUAAGGGAUUUUGAGUUUUUGCUUGUAACAUUUGAUCACUCGUCUUAUUCAAUUUUUUUUUACAAAUAUAAAAAACGAAAAGUUGUGCUUAUAGUACUGUAGAUAAUAAAGUAAGUCACAAUUAAAAUAAAUAAUAAUUUCAAAAAAUUUUAAAUAAGACGAGUGGUUAAACAUUAUAAGAAAAACUCAAAAUCCCUUAUAUUAUGGGACGGAGGGAGUAUGAUUUAAUCUGUGCGCUGCUGCUUUUCAUGUCUCUGCAAAUGCAGAUGUAUUGAUGUGACCUUCAAUCUCCAUGCAGAGUAUCAUAUCAUGACACACAAGGAUCUUUCGUUGGGUGCUGUGUACAAUUAUUGUUACCGAGGCCUUUGAAGGUAUUACAGUAAUAUAUUGUUACAUCUCCUUCACCGGGCUUCUAUACUAGAGAUCCUCCUAUUACUAUUUUAGUUCUUUUUAAACCAGACAACCUGAUUAGUUAUUCUUACUUAUCUUUUUAUACAAGAUUUUUUUUGACAAAAUUAUAUUUGCACCAUCAGAUGUAAAAUGCCAACUUUGUUCAAGCUCCCCUGAGCCAUAUACCAUAUAUUCAUGUUUUGCUUGAUUUCUA

Sequence
(XR_003243713.1):

GAUGGAUCCCAUCCCGCACGGCUGCGCAAUUCCCCCACGCAUCGCUGCAUUGGGGCGAGAGGGGAACCGAGCUAGGGUUUCACCUCCCCCGCCCGCCUCCUCCUCCUUACCGCGCGAACCGACCCGACCCCCGCUUCGCCGCUGCCGCAGCCGUGAUGGGGACGGAGCGGAAGCGCAUGGUGAGCCUCUUCGACGUGGUCGAUGAGAGCUCCGUCUCUACCAAGCUCGGCCACGCCGGCACCACCAACAGCACCGCCACCGCCGCGGCCAACCCGUCCAUCAAUUGGUGGACGGGGAGGCCCUACUCGGCAAGGUACCUCGAGAUCCUCUAGAAGCACCGCACGCUCCCCGUGUGGCAGCAGAAGGACGAUUUCCUCGCCGUCCUCCGUGACAACCAGACCCUCAUCCUCGUCGGAGAAACCGGAAGCAGCAAGACCACUCAGGGGAGCGGUGCUCCGGUAGGCCUCUCAUCGAGUUGUCUGAAUUCCCGGGCCUCCGCUCAUCCGCCACCACGCGUGUUCCAUGGAGCAUGAGCUCCUCUUUAGGGUUUCAGUACGGAGUAGAGUAAGUGUGUUCCGGCCACUGCCGUCAUUGCCUUCCACGGGACAGUCAGCUCCAGCAAGCGGAUAUAGAUCUGCAUUUUCAUCCGCAACAGCGCUUUAUCUGGUCUGACUCUAUUCAUUUUGUUGUCAAUUGGUUGGUUUCGCCAUCGUUUACUCUACAACAGAUGAUUUCCAUGGCCAUUGUUUCAUCCACAGGAAAAUUCAUGGACGGUUUACAAUGUAAAUUUAAUGUUGGGUGGUGUCUUAUCUUGACCAAACUGUGUUUUGAUAUAUAUGGUGCAGUGACUUUGUGAGCAGCUCAGUUUAAUAGAACCAAGUCUUAUAGGUAAGAUGGUUGAUCUCAAUCAUUGUUUCAAAUUGAUUGCCUACAACUCUUUGAAAUAGAAGGUAAAUUAACCAUACACUCGUCUACUAUAUAUGUUUGUGUAUGUCAUAUACUUGAUGAAAUGCUUGAUGGACUUAGCCCGUCGGUAUGCAUUAUUAGUUAAGUACUCAAAACUACACACUGCUGUCACUUAAUUUUAGAUUUCUCAUCACGUUCAGUUACAUAAGAGUCAGGCCUUAAAGGAUAUGGCAGCUAUUAACUGUAUAAUAUUUUGUCCCAAAUGGUUCAGUUCUAGAGCACUUAAAGAUGGCUAUUGCAGGUAUUAUAGGCCAGCACAAAGUUUGUUGGUGUUAUCUCUUUGUUGCUUGCAGUAUACUCAUAUCACAUUGAAGCCAAGUUAUGCUAUGUAUUACGUUGAUUUGGUCAUGAAAUUUUUCUCUCAAUUCAGGAAGCAUUUUUAUCCAACGAUGUAUGCACCUUCUCUGCUAAACAACUAUGCAGUGGAUGUGUUCAUGAUUGUUUUCUUCUGAUCCUAGCACAUUCCCUGAGAUAUCCUUCAAGAAUGAUGACUUCAAAUUCAUCGCGUGCCUUUUUUCCUCUCUCAUAUUUACAUUGUUAUGCCUAGGACAAUAGCUUCAGUUUAACAGUGUACCUCGCUGCUUGAUAAUUGCGAUGGGUAAGAUACUAUCAGUAAAAUGUGAAUCUAUUAUGUCCUUGAGAUUCUUCAUAUGGUUAUCCUCAACUGCUAACUUCUACUCCCUCCGUCCCACAAUAUAAGGGAUUUUGAGUUUUUGCUUGUAACAUUUGAUCACUCGUCUUAUUCAAUUUUUUUUUACAAAUAUAAAAAACGAAAAGUUGUGCUUAUAGUACUGUAGAUAAUAAAGUAAGUCACAAUUAAAAUAAAUAAUAAUUUCAAAAAAUUUUAAAUAAGACGAGUGGUUAAACAUUAUAAGAAAAACUCAAAAUCCCUUAUAUUAUGGGACGGAGGGAGUAUGAUUUAAUCUGUGCGCUGCUGCUUUUCAUGUCUCUGCAAAUGCAGAUGUAUUGAUGUGACCUUCAAUCUCCAUGCAGAGUAUCAUAUCAUGACACACAAGGAUCUUUCGUUGGGUGCUGUGUACAAUUAUUGUUACCGAGGCCUUUGAAGGUAUUACAGUAAUAUAUUGUUACAUCUCCUUCACCGGGCUUCUAUACUAGAGAUCCUCCUAUUACUAUUUUAGUUCUUUUUAAACCAGACAACCUGAUUAGUUAUUCUUACUUAUCUUUUUAUACAAGAUUUUUUUUGACAAAAUUAUAUUUGCACCAUCAGAUGUAAAAUGCCAACUUUGUUCAAGCUCCCCUGAGCCAUAUACCAUAUAUUCAUGUUUUGCUUGAUUUCUA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

189

LEP:

38.41%

ME_num:

277

MEP:

56.3%

HE_num:

25

HEP:

5.08%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

endosprem

Tau :

0.71

Avg Expression:

3.51

Tip: OSA-LNC9269405 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min"-1.548119172274370.0385154514705982