Chr:
Chr2
Start:
1928611
End:
1929620
Strand:
+
Ref_name:
LOC9269125
Sequence
(XR_001542929.2):
CGACGCGUGGCCUCGACGUGUCACACGCUGAGCUCGCUUUCUCCUCCUCCCAACUGCAUCGCCCUCAUUCCUACUCCCUCCCAAAACCGAGCAGCUCGAGAGGGAGAGCCUCUGCCUCUCCGCCGCUCAAGUUCUUGCCGCCGGCCGCAAGGAUGACGACCGUCGCCAUCGCCGAUUGAGCCGCGGUUGUCUCGAUCUCUUGUUCGUUCCCUUGUCUCCUCUCAGUGCUGGUUCCAUUCCCCUUAAGUUCAGUCGAUUUCAUGCAGUCGAUGUUCCGGAACACGGACCUUGCUAUUGCUGUUCUGGAGCAAGCCUGGAGCGCCGCCGUGGAUAGCGUCGCCGUUCCCGUCAAUCCGGUGGAUCUCAGGCCGAGGCUUCGCGCCACGAGAAUUGCCAAGAUCCCAGUAGCAAGCCCAUCGAAGGAAUCGAGCUGAGGCGUCGCCAUCGAGGAGAUCGAGCCCUUCUUCUUCAACUCCGGCCGCUGGCCGUGGUCGUCGAUUCCUUGAUCCCGGCCCGGAGUCCGGAUAGUGGUCGUCAUCGUCGCCCUGUCGAUUUCCGCCGCCGCCGGGCCAUUCCUCGCGCUGCCUGGCCACCGUGCCGAGCCAUCGCUGAGCCAAAGCCCAAAAGGCAUUUCCACCCGUUUAGUACAUCGUAAAAGAGGGCAAAAGCACAUUACAUACUGAGAUGUCUUCGCGGGAUUGGGCAUUUGGGCGAGUCACGAAUUUCUGGCGACGGGGCAACGAGCCAACGAAUGCACAUAAACGCGUUGCAUGUGAAAAAGGAAUUGAAAAAGAAUAAUAAUCUAAUGAAUCUCAACCUACUUCCUUUUGAAUGUAAACACUUUUUUGUUUCAGACAAGAAUAAAAACACCUUGUUAAUACUGAGAUGUAUAAUACUGAUAUAAUAGCAACGUUUAGUCAGUCCUCCUCAAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
2.64%
ME_num:
MEP:
42.48%
HE_num:
HEP:
54.67%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.74
Avg Expression:
29.00
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | -3.84488688260798 | 4.45385509282817e-09 |
| 2 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -2.95055402449128 | 4.03917406079225e-11 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -3.95871378911337 | 1.73291347570549e-48 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -2.52246191775034 | 6.37198517978989e-36 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -3.68761708967294 | 9.54256427158567e-53 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.26466724115442 | 7.5100165378064e-06 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.74500740909298 | 3.64553277327274e-27 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.62063403486571 | 1.67204564793351e-29 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.43095956441312 | 6.89491763129647e-33 |
| 10 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.11579706189014 | 0.000604403428210864 |
| 11 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h | -3.29196502431974 | 3.9171850039813e-07 |
| 12 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h | -3.22103885670928 | 8.12073757689498e-08 |
| 13 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -3.88588438944901 | 4.14273113302517e-09 |
| 14 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 2.2283690852158 | 3.26233270908675e-13 |
| 15 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 1.61492938044918 | 0.00096359676812156 |
| 16 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 1.62355798505104 | 1.73087500841122e-06 |
| 17 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | 1.16844381421778 | 0.00192498381729147 |
| 18 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | 1.18487445057124 | 1.00274102596055e-05 |
| 19 | 9311 // leaf // control--/--9311 // leaf // salt | 1.35257880209613 | 1.11659092510732e-11 |
| 20 | Baldo // root // control--/--Baldo // root // 100 mM NaCl | 1.30701436717059 | 0.0420249594951613 |
| 21 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.35714413906718 | 1.6298885449022e-33 |
| 22 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -3.63481294026902 | 1.87757826156954e-62 |
| 23 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 2.1697508676907 | 9.42669785321014e-09 |
| 24 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 2.16966190249542 | 9.46346778224141e-09 |
| 25 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 2.16959278220226 | 9.58299336576948e-09 |
| 26 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.6673966885795 | 7.70556164663597e-15 |
| 27 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -4.66144453192293 | 5.22091160363391e-47 |
| 28 | 9L136 // leaf // control--/--9L136 // leaf // salt | 1.66653166107958 | 3.1305680530933e-21 |
| 29 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -4.71656535020755 | 1.63379959701466e-73 |