Chr:
Chr6
Start:
16041350
End:
16043878
Strand:
+
Ref_name:
LOC9269119
Sequence
(XR_001546549.2):
UUUUACGGAUCUAGCGGCGCAGCGGAGGCAAGGAGGAGAGCGAUGGCUGCGGCGGUCGAUGGAGCAGUUCAACAGCGGCGGCGCGCCCCGCCUACGGCCAAGGGUGGCGGCGUCCAGGCGACGGGCGGCCGACUUAAUCACCACCCUCUCCCGCCGUUGCUCGAGGUGUGUUGCCCGGGGUUGUCGUCGGGUCGUGGCCGGAUCGGCAUGUGGCUCCUCGUGCAGAGGAAGCUGCGCAGCGGCGUCUCGGCGACAAGGAGGAGCGCCGGCGGCGGAGGAGGGGAUGAGGAGGAGCGCCGGCGAGGCGGAUCCGACCGGCCCCGCUGCCCACCCCUGGAGCGCCUCACCGCUUCUUCCUCUGUGAGGAGAAAUCGUUCACAGGCUAUCCCCUCUCGCCGGUGCCGGAGAGUGAGGGCAACCUAGGGUGGCGACAGCCCGGAUCCAAAUCCAGAAUUUCCCCGCCUGGAUUCGUGGGAAGAGGAUGGCAGCACCCGACGGCGGCGGCGUCCUGACUCAUCGGAGGUACGUGCAACUCUGCUAGCUCCUGGUUCUGGCACAACCCCUGAUGGCCGGCGAGGUGAGGAGUGAGGUGGCGUCAACGACUGCGGUGAAAUCCGUAGAGCGGAGAUCGAUCGCCCGUCCGCUCGUCUCAUCUGUCGUCGGCUGCCCUACCGCGUCGUUGGUCGCUCCCUCACUACUCUCGCUCUGGCGCUUUCUCCGUUGCCCGGUCGCCAACCCCCGUUUCACCGCUGUUGGCUGCCCGGACUGCUUGUGCCGGCGUGCUGCACUGCUGCAUCUCUGCACCACUGCACAAAGCCAUCAACACACCAGCAAUCCACCAUCCCAGCAAGCACAAGAUGCACAACACAGCUGCACGCCCCAUCUGAUGGCUAUGAGAAUGCCUCUCCAGACGGCCGUGGUGACAGAUAUCUGUCGACAGGGAGGACUUGAGAAUAUGCAGCACUUCGUCGGCUCAACGUCGAUUUGUUUUAUUGGCGUUGUCUUGCUUGUUGGAUUCGUGCAUGCAUAGAUGGAUCAUUGACCUUGAUCUACAUUGUCGUAUUAGUCUUGGCAUCAAUCUUCAUCACCGUAUCCUUCAGUGGUGUUGCUGUUGUGAUUUUUUUACUGGAGCUGUUGUGAUCUUUAAUUAGUUCUGUUUAUUCUACCAAUGUACCACAUUGCAUGUGUGAUCACAUCGUUGAUGUAAUACCGAAAUUAAUUUACUCGAUCAAAAUUUUUUUAAUCUAA
Sequence
(XR_003242773.1):
UUUUACGGAUCUAGCGGCGCAGCGGAGGCAAGGAGGAGAGCGAUGGCUGCGGCGGUCGAUGGAGCAGUUCAACAGCGGCGGCGCGCCCCGCCUACGGCCAAGGGUGGCGGCGUCCAGGCGACGGGCGGCCGACUUAAUCACCACCCUCUCCCGCCGUUGCUCGAGGUGUGUUGCCCGGGGUUGUCGUCGGGUCGUGGCCGGAUCGGCAUGUGGCUCCUCGUGCAGAGGAAGCUGCGCAGCGGCGUCUCGGCGACAAGGAGGAGCGCCGGCGGCGGAGGAGGGGAUGAGGAGGAGCGCCGGCGAGGCGGAUCCGACCGGCCCCGCUGCCCACCCCUGGAGCGCCUCACCGCUUCUUCCUCUGUGAGGAGAAAUCGUUCACAGGCUAUCCCCUCUCGCCGGUGCCGGAGAGUGAGGGCAACCUAGGGUGGCGACAGCCCGGAUCCAAAUCCAGAAUUUCCCCGCCUGGAUUCGUGGGAAGAGGAUGGCAGCACCCGACGGCGGCGGCGUCCUGACUCAUCGGAGAUCGAUCGCCCGUCCGCUCGUCUCAUCUGUCGUCGGCUGCCCUACCGCGUCGUUGGUCGCUCCCUCACUACUCUCGCUCUGGCGCUUUCUCCGUUGCCCGGUCGCCAACCCCCGUUUCACCGCUGUUGGCUGCCCGGACUGCUUGUGCCGGCGUGCUGCACUGCUGCAUCUCUGCACCACUGCACAAAGCCAUCAACACACCAGCAAUCCACCAUCCCAGCAAGCACAAGAUGCACAACACAGCUGCACGCCCCAUCUGAUGGCUAUGAGAAUGCCUCUCCAGACGGCCGUGGUGACAGAUAUCUGUCGACAGGGAGGACUUGAGAAUAUGCAGCACUUCGUCGGCUCAACGUCGAUUUGUUUUAUUGGCGUUGUCUUGCUUGUUGGAUUCGUGCAUGCAUAGAUGGAUCAUUGACCUUGAUCUACAUUGUCGUAUUAGUCUUGGCAUCAAUCUUCAUCACCGUAUCCUUCAGUGGUGUUGCUGUUGUGAUUUUUUUACUGGAGCUGUUGUGAUCUUUAAUUAGUUCUGUUUAUUCUACCAAUGUACCACAUUGCAUGUGUGAUCACAUCGUUGAUGUAAUACCGAAAUUAAUUUACUCGAUCAAAAUUUUUUUAAUCUAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
12.2%
ME_num:
MEP:
52.85%
HE_num:
HEP:
34.76%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.82
Avg Expression:
42.81
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.80078849218823 | 6.93824571141624e-06 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -2.80851027885222 | 2.26676191923888e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.7623752597221 | 0.00012174545320538 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -3.3642501053254 | 3.23757089683601e-09 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.15400804164541 | 0.00121593021563369 |
| 6 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 2.3514983566331 | 0.00156161751872899 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.76119470829621 | 2.45976048398333e-05 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.03316975729534 | 0.00257569328669889 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.72379331745301 | 4.61829264688146e-05 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.52619041961827 | 1.41536992494076e-05 |