Chr:
Chr3
Start:
35405859
End:
35407294
Strand:
-
Ref_name:
LOC9269089
Sequence
(XR_001544318.2):
CUCACUUGCUCACCUCGCACACUGUUCGCCUCACACGAUGAGCUCGAGAGGCCGACCACGAGCUCCGGCGGCGGCGGCGGCGGCGGAAAGCGCAGCGGUUCCCGGUCGUCGGCCGGCCAGGUCUUAUAGAGAGAAAGGCUUGGCAGCCAGGUUUCGCGCGAGGGCCGACGUUGCCUGCACAGAUCUGGCUCAGGUGGUAGCCGUCGGCCGGUCAGAUCCGGCGUGGGGAGUCAGGCGGGACAGCGGUGACUCGGAGGGAGGGCGAAACGUCGAUUCACGCUUCAGUUCUUGUUCCGAUCUGCAGCCCCUGGGCCGUUGGAGUGAUUGUUGGAAGCUCACGCAUUGAGAGAGUGGCAAAUGGCCAAACGCUCAAUCCAUCCAUGCUCACAUCACUCAAGAUUAGUUAUAAAGAGUUAAAGACAGUACCUAACUACCUGGAUUGGUGAUAUAAUUGGAAGGUAGGAAGGAUGAUCUUGCUGCAACAAGAAGUGCGUGUCACAUUAAAUCGAUUAUGUUGCGUGUACAAUAAACAGAUGCUGUUUUCUUUCAAUAUAUAUAAAUACCACCAAGAUGGAAAAUCAACCUAUAGAGCAUACAAAUAGUUAUGUUAUUAUAUACUGUAAUAUGUUCAGAAUAGCAAGUGUUUCUGAAUUAAGUGAUGGGAAAGCAAUAAAUCUGCUUGCACCAUGAUUAAUUGCUACAGUUUCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
9.55%
ME_num:
MEP:
40.04%
HE_num:
HEP:
50.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_elongation_zone
Tau :
0.62
Avg Expression:
15.98
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.88423055590905 | 8.55938684765783e-10 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.85180828800111 | 3.64940580753021e-10 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.48868840500063 | 1.75121267949731e-06 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.40744396270253 | 8.27854169543663e-05 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.55605106099263 | 9.92988950278375e-07 |
| 6 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.67155151312185 | 0.00234473824131321 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 1.20678407962046 | 0.0280251742570884 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.36960329735049 | 4.66141695352837e-06 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 1.20591722936 | 0.0110746763769923 |
| 10 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.63065726008158 | 0.019093954080219 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.10998288720038 | 0.00362269812732298 |