OSA-LNC9269070


Function Link


Basic Info

Chr:

Chr6

Start:

16963401

End:

16966798

Strand:

-

Ref_name:

LOC9269070

Sequence
(XR_001547021.2):

CAAACCCUAGCCCCCUCGCCCGUCUCGCCCGCAGCCUGGUGCACGCGCGGCGUCGCCUCUCCCUUCUACGCCGCCACGCCGUCGCCUCUCGCCGCCGCCUCGCCCUUCUUCCUCUGCGCGCGCCGUCGCCGCUGCAUCCUCGCCCUCCUCCAGCCAUCCUCGCCCUAGCCGCACUACUAGGCUCGCGCGCGCAUGACCUCACCUGCCGCCGCCGCCGCUCGCCCGCCGCCGCUUGCCCGCCGCCGCUCGCCUGCCGCUCGCCUGCCGCCGCCGCCGCCGCCGCCGCGGCUGCUCGCCUGCCGCCGUGCCGCUCCCCUCGCUCGGCACACCAGGCCACCUUCUCCCCUCUUCUCUCCUCUCAUCUCCAGGCCACCCACCGCCUCCCUCUUCCUCUCCCUAUCCUCGGUGAGCUACAGAUCCGGUUCGGGGGUCAUCGGAAUCGAUGGUCUCGGCCAUUGGUCUCCUCGCCGGUGAAUCGUUUUGAUACCCUUCUGCAUACAUUUAGCACAAAAUCCACAUGGUUCUGUGGAGAAAUUGAUGGGCUAGGAUGAGGUGUAAGUCGCAGAUUACAGAGAGGACGACUUUCAUUCUGCGCAUCUACCGUCAUACUGAACAAGUUAUCGAGCUUUCUCCUCUCUUAAUCAGGGCUGCGAUAUUUAGAUUAUGGUCUCCAGUUAUGCCAGUUUGCUUCUGGUUAUGUCCACAACAUAUUCAAUGUUGCAAAAUAAAUAUAAUGUAGCCAUGCUUCAGGUUACAGCUUCCAAUCCACAUCUUUUAAUAUUAUGUAGUGUGGCAUAUGCUUAUGAAAGUAAUCCAUAAUACUACUAUCUUCUGUUAGGCUUUCACAUUUAACUAUUUUAUUUUGUCGACAUCGUUUAACUUGGUGUUUUUUCCCCUUUUCCUAAGUGGUUGGUUGAUACUAUUACAAUAGUAUAGAUACACAUAAUGGAGCCAUGUUUCAGGUUAGAACUUCCAAUCUGCAUCUUUUAUUGUUAUGUUCACCUUCAAAUUUUCAUGAUGUUCAAAUGUGCUUAGAAAAUCAAGAACCAAAGAUGGAAGACAUUAUUAAGCUAGAAACAAAUUACAGCCUUGCAGAGUUAAAAGACUUGAAAGUGGUUGACCAUGUCUCAAGACCCAACACUUUCAUCUUAGAAAUGUUAAUUGAAAGCUUUCUCAAUGACAUUAUUUUCCAUAUAUCAAUUACUCCAACUAAUCUGGUACUAGCUACUGUAUAUGCAUAGUGAAUAGUUAGUAUUGCUUAAACAAUGUCUGGGACCGUUAUAUUCGUUGUAAGCAUAUAUUUCAAUUGUUUUCCUAUGAUGGUCAGUCAAAACCAGAUAAUCAAAAAAGAGAUAAAAAACUACUCUCUAUUGGUUAUUUGAUUUUCAGGCUUUCAAGAGAUUAGACUACUAGGCCUGCAUAAUUUGAAAUGCUAUUUAAUAAACUAUAUAUGUAUUUAAAUGUUCAGAAAUUUAGUUCCAGUUUAAAAUUUCAGGUGUAUGCAAUGUUGAAAACCACCAAAUCUGGGCAUUUCCUUCCAAACAACUUCUUUGAGAUGAAAUAGAUUCUGGGCAGUUGUUUCUUCCACCGUCCUUCAUUAUCUUUGUACUCUCGCAUCUAAAUUAUCCUAUGUCAAAUGUGCAUAUGAUUUAGUUCACAGCUAAAUGCAUCUAAAGGGCCAACACCAGAUCUUCUGCAGGUAACUGUGGCCUAACAUCUAAAGCCAUUAGUAGUACCCAUGUUCUUUUUUAGUUCAUAAGUCCUGGUACUGAUGUGGUGAUGCUAAGAAAGGUUUAUGUGUGAUACAAUUAAUAAGAUGUUAACCACAAAAAGAAUACAAAAGCUGUGCACUGUGCAUUAAUUGAUACUCCGUAAUUUGUUGUUUGCAGACGCAGCAAAAAUAUAUUAGAGUACAAAGGGUAAUUUGUCUUUGCCAAAAGAAUGGAGUUGAUUUUCCUAUCUUCUUAAUAGGAAAGAAUUCAAGUACAUAGUCUCUUCUAGGUAAUUUCUUCCAGAGUUUCAGUGCUGUCUGGGAUUACAAGCAGUCAAUGCCUCUUCUUAAGUAAUUUCCUUCAGUGUCGUCUGGGAUUACAAGCAGUAGAUGCCCGAUGCCACAAGUGUUAGCUUAUAUGUGAGAAACCUACAAAUACUUAAAAUUAGAUGCUACUGCCGAACCUACAAAUCUGUUCUCAAUUCUGAUGGGUUUGAUGCUUGCCUAAAAGUGCAGAAAAAACAAGGUUGGUAUGCCGCAUGUCUUCACUUUCUACCACAGAGUUAUUGCGCGUUUGUAAACAUGGUGAAAGAGAUGUAUCUCUGAAGCAUAAUCAAUUCAUUAGCAAUUUCAAUGUUAGGUUGUUUUUCUUUAGCCAGCAGCGCAAGAGAAAAUAGCAUAACAAUUUCAAUGUUACGCAUUUGUGUAUUCGACAGAAGGUCCAGUUAUGUGCUCCAUUGGAGAUAUUCUUAUUCUCUUCUCAAA

Sequence
(XR_001547022.2):

GGCCGGACCAAACCCUAGCCCCCUCGCCCGUCUCGCCCGCAGCCUGGUGCACGCGCGGCGUCGCCUCUCCCUUCUACGCCGCCACGCCGUCGCCUCUCGCCGCCGCCUCGCCCUUCUUCCUCUGCGCGCGCCGUCGCCGCUGCAUCCUCGCCCUCCUCCAGCCAUCCUCGCCCUAGCCGCACUACUAGGCUCGCGCGCGCAUGACCUCACCUGCCGCCGCCGCCGCUCGCCCGCCGCCGCUUGCCCGCCGCCGCUCGCCUGCCGCUCGCCUGCCGCCGCCGCCGCCGCCGCCGCGGCUGCUCGCCUGCCGCCGUGCCGCUCCCCUCGCUCGGCACACCAGGCCACCUUCUCCCCUCUUCUCUCCUCUCAUCUCCAGGCCACCCACCGCCUCCCUCUUCCUCUCCCUAUCCUCGGUGAGCUACAGAUCCGGUUCGGGGGUCAUCGGAAUCGAUGGUCUCGGCCAUUGGUCUCCUCGCCGGUGAAUCGUUUUGAUACCCUUCUGCAUACAUUUAGCACAAAAUCCACAUGGUUCUGUGGAGAAAUUGAUGGGCUAGGAUGAGGUGUAAGUCGCAGAUUACAGAGAGGACGACUUUCAUUCUGCGCAUCUACCGUCAUACUGAACAAGUUAUCGAGCUUUCUCCUCUCUUAAUCAGGGCUGCGAUAUUUAGAUUAUGGUCUCCAGUUAUGCCAGUUUGCUUCUGGUUAUGUCCACAACAUAUUCAAUGUUGCAAAAUAAAUAUAAUGUAGCCAUGCUUCAGGUUACAGCUUCCAAUCCACAUCUUUUAAUAUUAUGUAGUGUGGCAUAUGCUUAUGAAAGUAAUCCAUAAUACUACUAUCUUCUGUUAGGCUUUCACAUUUAACUAUUUUAUUUUGUCGACAUCGUUUAACUUGGUGUUUUUUCCCCUUUUCCUAAGUGGUUGGUUGAUACUAUUACAAUAGUAUAGAUACACAUAAUGGAGCCAUGUUUCAGGUGUAUGCAAUGUUGAAAACCACCAAAUCUGGGCAUUUCCUUCCAAACAACUUCUUUGAGAUGAAAUAGAUUCUGGGCAGUUGUUUCUUCCACCGUCCUUCAUUAUCUUUGUACUCUCGCAUCUAAAUUAUCCUAUGUCAAAUGUGCAUAUGAUUUAGUUCACAGCUAAAUGCAUCUAAAGGGCCAACACCAGAUCUUCUGCAGGUAACUGUGGCCUAACAUCUAAAGCCAUUAGUAGUACCCAUGUUCUUUUUUAGUUCAUAAGUCCUGGUACUGAUGUGGUGAUGCUAAGAAAGGUUUAUGUGUGAUACAAUUAAUAAGAUGUUAACCACAAAAAGAAUACAAAAGCUGUGCACUGUGCAUUAAUUGAUACUCCGUAAUUUGUUGUUUGCAGACGCAGCAAAAAUAUAUUAGAGUACAAAGGGUAAUUUGUCUUUGCCAAAAGAAUGGAGUUGAUUUUCCUAUCUUCUUAAUAGGAAAGAAUUCAAGUACAUAGUCUCUUCUAGGUAAUUUCUUCCAGAGUUUCAGUGCUGUCUGGGAUUACAAGCAGUCAAUGCCUCUUCUUAAGUAAUUUCCUUCAGUGUCGUCUGGGAUUACAAGCAGUAGAUGCCCGAUGCCACAAGUGUUAGCUUAUAUGUGAGAAACCUACAAAUACUUAAAAUUAGAUGCUACUGCCGAACCUACAAAUCUGUUCUCAAUUCUGAUGGGUUUGAUGCUUGCCUAAAAGUGCAGAAAAAACAAGGUUGGUAUGCCGCAUGUCUUCACUUUCUACCACAGAGUUAUUGCGCGUUUGUAAACAUGGUGAAAGAGAUGUAUCUCUGAAGCAUAAUCAAUUCAUUAGCAAUUUCAAUGUUAGGUUGUUUUUCUUUAGCCAGCAGCGCAAGAGAAAAUAGCAUAACAAUUUCAAUGUUACGCAUUUGUGUAUUCGACAGAAGGUCCAGUUAUGUGCUCCAUUGGAGAUAUUCUUAUUCUCUUCUCAAA

Sequence
(XR_001547023.2):

CCGGACCAAACCCUAGCCCCCUCGCCCGUCUCGCCCGCAGCCUGGUGCACGCGCGGCGUCGCCUCUCCCUUCUACGCCGCCACGCCGUCGCCUCUCGCCGCCGCCUCGCCCUUCUUCCUCUGCGCGCGCCGUCGCCGCUGCAUCCUCGCCCUCCUCCAGCCAUCCUCGCCCUAGCCGCACUACUAGGCUCGCGCGCGCAUGACCUCACCUGCCGCCGCCGCCGCUCGCCCGCCGCCGCUUGCCCGCCGCCGCUCGCCUGCCGCUCGCCUGCCGCCGCCGCCGCCGCCGCCGCGGCUGCUCGCCUGCCGCCGUGCCGCUCCCCUCGCUCGGCACACCAGGCCACCUUCUCCCCUCUUCUCUCCUCUCAUCUCCAGGCCACCCACCGCCUCCCUCUUCCUCUCCCUAUCCUCGGUGAGCUACAGAUCCGGUUCGGGGGUCAUCGGAAUCGAUGGUCUCGGCCAUUGGUCUCCUCGCCGGUGAAUCGUUUUGAUACCCUUCUGCAUACAUUUAGCACAAAAUCCACAUGGUUCUGUGGAGAAAUUGAUGGGCUAGGAUGAGGUGUAAGUCGCAGAUUACAGAGAGGACGACUUUCAUUCUGCGCAUCUACCGUCAUACUGAACAAGUUAUCGAGCUUUCUCCUCUCUUAAUCAGGGCUGCGAUAUUUAGAUUAUGGUCUCCAGUUAUGCCAGUUUGCUUCUGGUUAUGUCCACAACAUAUUCAAUGUUGCAAAAUAAAUAUAAUGUAGCCAUGCUUCAGGUUACAGCUUCCAAUCCACAUCUUUUAAUAUUAUGUAGUGUGGCAUAUGCUUAUGAAAGUAAUCCAUAAUACUACUAUCUUCUGUUAGGCUUUCACAUUUAACUAUUUUAUUUUGUCGACAUCGUUUAACUUGGUGUUUUUUCCCCUUUUCCUAAGUGGUUGGUUGAUACUAUUACAAUAGUAUAGAUACACAUAAUGGAGCCAUGUUUCAGGUUAGAACUUCCAAUCUGCAUCUUUUAUUGUUAUGUUCACCUUCAAAUUUUCAUGAUGUUCAAAUGUGCUUAGAAAAUCAAGAACCAAAGAUGGAAGACAUUAUUAAGCUAGAAACAAAUUACAGCCUUGCAGAGUUAAAAGACUUGAAAGUGGUUGACCAUGUCUCAAGACCCAACACUUUCAUCUUAGAAAUGUUAAUUGAAAGCUUUCUCAAUGACAUUAUUUUCCAUAUAUCAAUUACUCCAACUAAUCUGGUACUAGCUACUGUAUAUGCAUAGUGAAUAGUUAGUAUUGCUUAAACAAUGUCUGGGACCGUUAUAUUCGUUGUAAGCAUAUAUUUCAAUUGUUUUCCUAUGAUGGUCAGUCAAAACCAGAUAAUCAAAAAAGAGAUAAAAAACUACUCUCUAUUGGUUAUUUGAUUUUCAGGCUUUCAAGAGAUUAGACUACUAGGCCUGCAUAAUUUGAAAUGCUAUUUAAUAAACUAUAUAUGUAUUUAAAUGUUCAGAAAUUUAGUUCCAGUUUAAAAUUUCAGGUGUAUGCAAUGUUGAAAACCACCAAAUCUGGGCAUUUCCUUCCAAACAACUUCUUUGAGAUGAAAUAGAUUCUGGGCAGUUGUUUCUUCCACCGUCCUUCAUUAUCUUUGUACUCUCGCAUCUAAAUUAUCCUAUGUCAAAUGUGCAUAUGAUUUAGUUCACAGCUAAAUGCAUCUAAAGGGCCAACACCAGAUCUUCUGCAGGUAACUGUGGCCUAACAUCUAAAGCCAUUAGUAGUACCCAUGUUCUUUUUUAGUUCAUAAGUCCUGGUACUGAUGUGGUGAUGCUAAGAAAGGUUUAUGUGUGAUACAAUUAAUAAGAUGUUAACCACAAAAAGAAUACAAAAGCUGUGCACUGUGCAUUAAUUGAUACUCCGUAAUUUGUUGUUUGCAGACGCAGCAAAAAUAUAUUAGAGUACAAAGGGUAAUUUGUCUUUGCCAAAAGAAUGGAGUUGAUUUUCCUAUCUUCUUAAUAGGAAAGAAUUCAAGUACAUAGUCUCUUCUAGGUAAUUUCUUCCAGAGUUUCAGUGCUGUCUGGGAUUACAAGCAGUCAAUGCCUCUUCUUAAGUAAUUUCCUUCAGUGUCGUCUGGGAUUACAAGCAGUAGAUGCCCGAUGCCACAAGUGUUAGCUUAUAUAAAAAACAAGGUUGGUAUGCCGCAUGUCUUCACUUUCUACCACAGAGUUAUUGCGCGUUUGUAAACAUGGUGAAAGAGAUGUAUCUCUGAAGCAUAAUCAAUUCAUUAGCAAUUUCAAUGUUAGGUUGUUUUUCUUUAGCCAGCAGCGCAAGAGAAAAUAGCAUAACAAUUUCAAUGUUACGCAUUUGUGUAUUCGACAGAAGGUCCAGUUAUGUGCUCCAUUGGAGAUAUUCUUAUUCUCUUCUCAAAUUGUCGAUUGGAGUAUUUGGUCGUUCAUGUGUAUGGCUUAAAAUAUUCAACAAUAUUGUAUCGAAGUGGUUAUCUUCUCAUGUUAGACAUAAGAAUUCCUUCUA

Sequence
(XR_001547024.2):

CCGGACCAAACCCUAGCCCCCUCGCCCGUCUCGCCCGCAGCCUGGUGCACGCGCGGCGUCGCCUCUCCCUUCUACGCCGCCACGCCGUCGCCUCUCGCCGCCGCCUCGCCCUUCUUCCUCUGCGCGCGCCGUCGCCGCUGCAUCCUCGCCCUCCUCCAGCCAUCCUCGCCCUAGCCGCACUACUAGGCUCGCGCGCGCAUGACCUCACCUGCCGCCGCCGCCGCUCGCCCGCCGCCGCUUGCCCGCCGCCGCUCGCCUGCCGCUCGCCUGCCGCCGCCGCCGCCGCCGCCGCGGCUGCUCGCCUGCCGCCGUGCCGCUCCCCUCGCUCGGCACACCAGGCCACCUUCUCCCCUCUUCUCUCCUCUCAUCUCCAGGCCACCCACCGCCUCCCUCUUCCUCUCCCUAUCCUCGGUGAGCUACAGAUCCGGUUCGGGGGUCAUCGGAAUCGAUGGUCUCGGCCAUUGGUCUCCUCGCCGGUGAAUCGUUUUGAUACCCUUCUGCAUACAUUUAGCACAAAAUCCACAUGGUUCUGUGGAGAAAUUGAUGGGCUAGGAUGAGGUGUAAGUCGCAGAUUACAGAGAGGACGACUUUCAUUCUGCGCAUCUACCGUCAUACUGAACAAGUUAUCGAGCUUUCUCCUCUCUUAAUCAGGGCUGCGAUAUUUAGAUUAUGGUCUCCAGUUAUGCCAGUUUGCUUCUGGUUAUGUCCACAACAUAUUCAAUGUUGCAAAAUAAAUAUAAUGUAGCCAUGCUUCAGGUUACAGCUUCCAAUCCACAUCUUUUAAUAUUAUGUAGUGUGGCAUAUGCUUAUGAAAGUAAUCCAUAAUACUACUAUCUUCUGUUAGGCUUUCACAUUUAACUAUUUUAUUUUGUCGACAUCGUUUAACUUGGUGUUUUUUCCCCUUUUCCUAAGUGGUUGGUUGAUACUAUUACAAUAGUAUAGAUACACAUAAUGGAGCCAUGUUUCAGGUUAGAACUUCCAAUCUGCAUCUUUUAUUGUUAUGUUCACCUUCAAAUUUUCAUGAUGUUCAAAUGUGCUUAGAAAAUCAAGAACCAAAGAUGGAAGACAUUAUUAAGCUAGAAACAAAUUACAGCCUUGCAGAGUUAAAAGACUUGAAAGUGGUUGACCAUGUCUCAAGACCCAACACUUUCAUCUUAGAAAUGUUAAUUGAAAGCUUUCUCAAUGACAUUAUUUUCCAUAUAUCAAUUACUCCAACUAAUCUGGUACUAGCUACUGUAUAUGCAUAGUGAAUAGUUAGUAUUGCUUAAACAAUGUCUGGGACCGUUAUAUUCGUUGUAAGCAUAUAUUUCAAUUGUUUUCCUAUGAUGGUCAGUCAAAACCAGAUAAUCAAAAAAGAGAUAAAAAACUACUCUCUAUUGGUUAUUUGAUUUUCAGGCUUUCAAGAGAUUAGACUACUAGGCCUGCAUAAUUUGAAAUGCUAUUUAAUAAACUAUAUAUGUAUUUAAAUGUUCAGAAAUUUAGUUCCAGUUUAAAAUUUCAGGUGUAUGCAAUGUUGAAAACCACCAAAUCUGGGCAUUUCCUUCCAAACAACUUCUUUGAGAUGAAAUAGAUUCUGGGCAGUUGUUUCUUCCACCGUCCUUCAUUAUCUUUGUACUCUCGCAUCUAAAUUAUCCUAUGUCAAAUGUGCAUAUGAUUUAGUUCACAGCUAAAUGCAUCUAAAGGGCCAACACCAGAUCUUCUGCAGACGCAGCAAAAAUAUAUUAGAGUACAAAGGGUAAUUUGUCUUUGCCAAAAGAAUGGAGUUGAUUUUCCUAUCUUCUUAAUAGGAAAGAAUUCAAGUACAUAGUCUCUUCUAGGUAAUUUCUUCCAGAGUUUCAGUGCUGUCUGGGAUUACAAGCAGUCAAUGCCUCUUCUUAAGUAAUUUCCUUCAGUGUCGUCUGGGAUUACAAGCAGUAGAUGCCCGAUGCCACAAGUGUUAGCUUAUAUGUGAGAAACCUACAAAUACUUAAAAUUAGAUGCUACUGCCGAACCUACAAAUCUGUUCUCAAUUCUGAUGGGUUUGAUGCUUGCCUAAAAGUGCAGAAAAAACAAGGUUGGUAUGCCGCAUGUCUUCACUUUCUACCACAGAGUUAUUGCGCGUUUGUAAACAUGGUGAAAGAGAUGUAUCUCUGAAGCAUAAUCAAUUCAUUAGCAAUUUCAAUGUUAGGUUGUUUUUCUUUAGCCAGCAGCGCAAGAGAAAAUAGCAUAACAAUUUCAAUGUUACGCAUUUGUGUAUUCGACAGAAGGUCCAGUUAUGUGCUCCAUUGGAGAUAUUCUUAUUCUCUUCUCAAA


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

8

LEP:

1.63%

ME_num:

35

MEP:

7.11%

HE_num:

448

HEP:

91.06%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

callus

Tau :

0.65

Avg Expression:

36.03

Tip: OSA-LNC9269070 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN-1.559948494851462.5903057071355e-30
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA-1.946681415195571.45937586086167e-12
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN-1.42991206822011.07588679486896e-24
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA-2.138926294554242.83459046096453e-40
5Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA-1.230354570777216.69254234351696e-26
6Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA-2.619532840151025.08525594959997e-81
7Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN-1.201990560292422.467186036011e-25
8Nipponbare // panicle // AM--/--Nipponbare // panicle // PM1.770743308622043.87909249813383e-08
9Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA-1.393130564150141.81642423611163e-16
10Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day1.268585878753421.47533581409207e-16
11Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA-2.162502784197272.2503193982998e-59