Chr:
Chr6
Start:
16963401
End:
16966798
Strand:
-
Ref_name:
LOC9269070
Sequence
(XR_001547021.2):
CAAACCCUAGCCCCCUCGCCCGUCUCGCCCGCAGCCUGGUGCACGCGCGGCGUCGCCUCUCCCUUCUACGCCGCCACGCCGUCGCCUCUCGCCGCCGCCUCGCCCUUCUUCCUCUGCGCGCGCCGUCGCCGCUGCAUCCUCGCCCUCCUCCAGCCAUCCUCGCCCUAGCCGCACUACUAGGCUCGCGCGCGCAUGACCUCACCUGCCGCCGCCGCCGCUCGCCCGCCGCCGCUUGCCCGCCGCCGCUCGCCUGCCGCUCGCCUGCCGCCGCCGCCGCCGCCGCCGCGGCUGCUCGCCUGCCGCCGUGCCGCUCCCCUCGCUCGGCACACCAGGCCACCUUCUCCCCUCUUCUCUCCUCUCAUCUCCAGGCCACCCACCGCCUCCCUCUUCCUCUCCCUAUCCUCGGUGAGCUACAGAUCCGGUUCGGGGGUCAUCGGAAUCGAUGGUCUCGGCCAUUGGUCUCCUCGCCGGUGAAUCGUUUUGAUACCCUUCUGCAUACAUUUAGCACAAAAUCCACAUGGUUCUGUGGAGAAAUUGAUGGGCUAGGAUGAGGUGUAAGUCGCAGAUUACAGAGAGGACGACUUUCAUUCUGCGCAUCUACCGUCAUACUGAACAAGUUAUCGAGCUUUCUCCUCUCUUAAUCAGGGCUGCGAUAUUUAGAUUAUGGUCUCCAGUUAUGCCAGUUUGCUUCUGGUUAUGUCCACAACAUAUUCAAUGUUGCAAAAUAAAUAUAAUGUAGCCAUGCUUCAGGUUACAGCUUCCAAUCCACAUCUUUUAAUAUUAUGUAGUGUGGCAUAUGCUUAUGAAAGUAAUCCAUAAUACUACUAUCUUCUGUUAGGCUUUCACAUUUAACUAUUUUAUUUUGUCGACAUCGUUUAACUUGGUGUUUUUUCCCCUUUUCCUAAGUGGUUGGUUGAUACUAUUACAAUAGUAUAGAUACACAUAAUGGAGCCAUGUUUCAGGUUAGAACUUCCAAUCUGCAUCUUUUAUUGUUAUGUUCACCUUCAAAUUUUCAUGAUGUUCAAAUGUGCUUAGAAAAUCAAGAACCAAAGAUGGAAGACAUUAUUAAGCUAGAAACAAAUUACAGCCUUGCAGAGUUAAAAGACUUGAAAGUGGUUGACCAUGUCUCAAGACCCAACACUUUCAUCUUAGAAAUGUUAAUUGAAAGCUUUCUCAAUGACAUUAUUUUCCAUAUAUCAAUUACUCCAACUAAUCUGGUACUAGCUACUGUAUAUGCAUAGUGAAUAGUUAGUAUUGCUUAAACAAUGUCUGGGACCGUUAUAUUCGUUGUAAGCAUAUAUUUCAAUUGUUUUCCUAUGAUGGUCAGUCAAAACCAGAUAAUCAAAAAAGAGAUAAAAAACUACUCUCUAUUGGUUAUUUGAUUUUCAGGCUUUCAAGAGAUUAGACUACUAGGCCUGCAUAAUUUGAAAUGCUAUUUAAUAAACUAUAUAUGUAUUUAAAUGUUCAGAAAUUUAGUUCCAGUUUAAAAUUUCAGGUGUAUGCAAUGUUGAAAACCACCAAAUCUGGGCAUUUCCUUCCAAACAACUUCUUUGAGAUGAAAUAGAUUCUGGGCAGUUGUUUCUUCCACCGUCCUUCAUUAUCUUUGUACUCUCGCAUCUAAAUUAUCCUAUGUCAAAUGUGCAUAUGAUUUAGUUCACAGCUAAAUGCAUCUAAAGGGCCAACACCAGAUCUUCUGCAGGUAACUGUGGCCUAACAUCUAAAGCCAUUAGUAGUACCCAUGUUCUUUUUUAGUUCAUAAGUCCUGGUACUGAUGUGGUGAUGCUAAGAAAGGUUUAUGUGUGAUACAAUUAAUAAGAUGUUAACCACAAAAAGAAUACAAAAGCUGUGCACUGUGCAUUAAUUGAUACUCCGUAAUUUGUUGUUUGCAGACGCAGCAAAAAUAUAUUAGAGUACAAAGGGUAAUUUGUCUUUGCCAAAAGAAUGGAGUUGAUUUUCCUAUCUUCUUAAUAGGAAAGAAUUCAAGUACAUAGUCUCUUCUAGGUAAUUUCUUCCAGAGUUUCAGUGCUGUCUGGGAUUACAAGCAGUCAAUGCCUCUUCUUAAGUAAUUUCCUUCAGUGUCGUCUGGGAUUACAAGCAGUAGAUGCCCGAUGCCACAAGUGUUAGCUUAUAUGUGAGAAACCUACAAAUACUUAAAAUUAGAUGCUACUGCCGAACCUACAAAUCUGUUCUCAAUUCUGAUGGGUUUGAUGCUUGCCUAAAAGUGCAGAAAAAACAAGGUUGGUAUGCCGCAUGUCUUCACUUUCUACCACAGAGUUAUUGCGCGUUUGUAAACAUGGUGAAAGAGAUGUAUCUCUGAAGCAUAAUCAAUUCAUUAGCAAUUUCAAUGUUAGGUUGUUUUUCUUUAGCCAGCAGCGCAAGAGAAAAUAGCAUAACAAUUUCAAUGUUACGCAUUUGUGUAUUCGACAGAAGGUCCAGUUAUGUGCUCCAUUGGAGAUAUUCUUAUUCUCUUCUCAAA
Sequence
(XR_001547022.2):
GGCCGGACCAAACCCUAGCCCCCUCGCCCGUCUCGCCCGCAGCCUGGUGCACGCGCGGCGUCGCCUCUCCCUUCUACGCCGCCACGCCGUCGCCUCUCGCCGCCGCCUCGCCCUUCUUCCUCUGCGCGCGCCGUCGCCGCUGCAUCCUCGCCCUCCUCCAGCCAUCCUCGCCCUAGCCGCACUACUAGGCUCGCGCGCGCAUGACCUCACCUGCCGCCGCCGCCGCUCGCCCGCCGCCGCUUGCCCGCCGCCGCUCGCCUGCCGCUCGCCUGCCGCCGCCGCCGCCGCCGCCGCGGCUGCUCGCCUGCCGCCGUGCCGCUCCCCUCGCUCGGCACACCAGGCCACCUUCUCCCCUCUUCUCUCCUCUCAUCUCCAGGCCACCCACCGCCUCCCUCUUCCUCUCCCUAUCCUCGGUGAGCUACAGAUCCGGUUCGGGGGUCAUCGGAAUCGAUGGUCUCGGCCAUUGGUCUCCUCGCCGGUGAAUCGUUUUGAUACCCUUCUGCAUACAUUUAGCACAAAAUCCACAUGGUUCUGUGGAGAAAUUGAUGGGCUAGGAUGAGGUGUAAGUCGCAGAUUACAGAGAGGACGACUUUCAUUCUGCGCAUCUACCGUCAUACUGAACAAGUUAUCGAGCUUUCUCCUCUCUUAAUCAGGGCUGCGAUAUUUAGAUUAUGGUCUCCAGUUAUGCCAGUUUGCUUCUGGUUAUGUCCACAACAUAUUCAAUGUUGCAAAAUAAAUAUAAUGUAGCCAUGCUUCAGGUUACAGCUUCCAAUCCACAUCUUUUAAUAUUAUGUAGUGUGGCAUAUGCUUAUGAAAGUAAUCCAUAAUACUACUAUCUUCUGUUAGGCUUUCACAUUUAACUAUUUUAUUUUGUCGACAUCGUUUAACUUGGUGUUUUUUCCCCUUUUCCUAAGUGGUUGGUUGAUACUAUUACAAUAGUAUAGAUACACAUAAUGGAGCCAUGUUUCAGGUGUAUGCAAUGUUGAAAACCACCAAAUCUGGGCAUUUCCUUCCAAACAACUUCUUUGAGAUGAAAUAGAUUCUGGGCAGUUGUUUCUUCCACCGUCCUUCAUUAUCUUUGUACUCUCGCAUCUAAAUUAUCCUAUGUCAAAUGUGCAUAUGAUUUAGUUCACAGCUAAAUGCAUCUAAAGGGCCAACACCAGAUCUUCUGCAGGUAACUGUGGCCUAACAUCUAAAGCCAUUAGUAGUACCCAUGUUCUUUUUUAGUUCAUAAGUCCUGGUACUGAUGUGGUGAUGCUAAGAAAGGUUUAUGUGUGAUACAAUUAAUAAGAUGUUAACCACAAAAAGAAUACAAAAGCUGUGCACUGUGCAUUAAUUGAUACUCCGUAAUUUGUUGUUUGCAGACGCAGCAAAAAUAUAUUAGAGUACAAAGGGUAAUUUGUCUUUGCCAAAAGAAUGGAGUUGAUUUUCCUAUCUUCUUAAUAGGAAAGAAUUCAAGUACAUAGUCUCUUCUAGGUAAUUUCUUCCAGAGUUUCAGUGCUGUCUGGGAUUACAAGCAGUCAAUGCCUCUUCUUAAGUAAUUUCCUUCAGUGUCGUCUGGGAUUACAAGCAGUAGAUGCCCGAUGCCACAAGUGUUAGCUUAUAUGUGAGAAACCUACAAAUACUUAAAAUUAGAUGCUACUGCCGAACCUACAAAUCUGUUCUCAAUUCUGAUGGGUUUGAUGCUUGCCUAAAAGUGCAGAAAAAACAAGGUUGGUAUGCCGCAUGUCUUCACUUUCUACCACAGAGUUAUUGCGCGUUUGUAAACAUGGUGAAAGAGAUGUAUCUCUGAAGCAUAAUCAAUUCAUUAGCAAUUUCAAUGUUAGGUUGUUUUUCUUUAGCCAGCAGCGCAAGAGAAAAUAGCAUAACAAUUUCAAUGUUACGCAUUUGUGUAUUCGACAGAAGGUCCAGUUAUGUGCUCCAUUGGAGAUAUUCUUAUUCUCUUCUCAAA
Sequence
(XR_001547023.2):
CCGGACCAAACCCUAGCCCCCUCGCCCGUCUCGCCCGCAGCCUGGUGCACGCGCGGCGUCGCCUCUCCCUUCUACGCCGCCACGCCGUCGCCUCUCGCCGCCGCCUCGCCCUUCUUCCUCUGCGCGCGCCGUCGCCGCUGCAUCCUCGCCCUCCUCCAGCCAUCCUCGCCCUAGCCGCACUACUAGGCUCGCGCGCGCAUGACCUCACCUGCCGCCGCCGCCGCUCGCCCGCCGCCGCUUGCCCGCCGCCGCUCGCCUGCCGCUCGCCUGCCGCCGCCGCCGCCGCCGCCGCGGCUGCUCGCCUGCCGCCGUGCCGCUCCCCUCGCUCGGCACACCAGGCCACCUUCUCCCCUCUUCUCUCCUCUCAUCUCCAGGCCACCCACCGCCUCCCUCUUCCUCUCCCUAUCCUCGGUGAGCUACAGAUCCGGUUCGGGGGUCAUCGGAAUCGAUGGUCUCGGCCAUUGGUCUCCUCGCCGGUGAAUCGUUUUGAUACCCUUCUGCAUACAUUUAGCACAAAAUCCACAUGGUUCUGUGGAGAAAUUGAUGGGCUAGGAUGAGGUGUAAGUCGCAGAUUACAGAGAGGACGACUUUCAUUCUGCGCAUCUACCGUCAUACUGAACAAGUUAUCGAGCUUUCUCCUCUCUUAAUCAGGGCUGCGAUAUUUAGAUUAUGGUCUCCAGUUAUGCCAGUUUGCUUCUGGUUAUGUCCACAACAUAUUCAAUGUUGCAAAAUAAAUAUAAUGUAGCCAUGCUUCAGGUUACAGCUUCCAAUCCACAUCUUUUAAUAUUAUGUAGUGUGGCAUAUGCUUAUGAAAGUAAUCCAUAAUACUACUAUCUUCUGUUAGGCUUUCACAUUUAACUAUUUUAUUUUGUCGACAUCGUUUAACUUGGUGUUUUUUCCCCUUUUCCUAAGUGGUUGGUUGAUACUAUUACAAUAGUAUAGAUACACAUAAUGGAGCCAUGUUUCAGGUUAGAACUUCCAAUCUGCAUCUUUUAUUGUUAUGUUCACCUUCAAAUUUUCAUGAUGUUCAAAUGUGCUUAGAAAAUCAAGAACCAAAGAUGGAAGACAUUAUUAAGCUAGAAACAAAUUACAGCCUUGCAGAGUUAAAAGACUUGAAAGUGGUUGACCAUGUCUCAAGACCCAACACUUUCAUCUUAGAAAUGUUAAUUGAAAGCUUUCUCAAUGACAUUAUUUUCCAUAUAUCAAUUACUCCAACUAAUCUGGUACUAGCUACUGUAUAUGCAUAGUGAAUAGUUAGUAUUGCUUAAACAAUGUCUGGGACCGUUAUAUUCGUUGUAAGCAUAUAUUUCAAUUGUUUUCCUAUGAUGGUCAGUCAAAACCAGAUAAUCAAAAAAGAGAUAAAAAACUACUCUCUAUUGGUUAUUUGAUUUUCAGGCUUUCAAGAGAUUAGACUACUAGGCCUGCAUAAUUUGAAAUGCUAUUUAAUAAACUAUAUAUGUAUUUAAAUGUUCAGAAAUUUAGUUCCAGUUUAAAAUUUCAGGUGUAUGCAAUGUUGAAAACCACCAAAUCUGGGCAUUUCCUUCCAAACAACUUCUUUGAGAUGAAAUAGAUUCUGGGCAGUUGUUUCUUCCACCGUCCUUCAUUAUCUUUGUACUCUCGCAUCUAAAUUAUCCUAUGUCAAAUGUGCAUAUGAUUUAGUUCACAGCUAAAUGCAUCUAAAGGGCCAACACCAGAUCUUCUGCAGGUAACUGUGGCCUAACAUCUAAAGCCAUUAGUAGUACCCAUGUUCUUUUUUAGUUCAUAAGUCCUGGUACUGAUGUGGUGAUGCUAAGAAAGGUUUAUGUGUGAUACAAUUAAUAAGAUGUUAACCACAAAAAGAAUACAAAAGCUGUGCACUGUGCAUUAAUUGAUACUCCGUAAUUUGUUGUUUGCAGACGCAGCAAAAAUAUAUUAGAGUACAAAGGGUAAUUUGUCUUUGCCAAAAGAAUGGAGUUGAUUUUCCUAUCUUCUUAAUAGGAAAGAAUUCAAGUACAUAGUCUCUUCUAGGUAAUUUCUUCCAGAGUUUCAGUGCUGUCUGGGAUUACAAGCAGUCAAUGCCUCUUCUUAAGUAAUUUCCUUCAGUGUCGUCUGGGAUUACAAGCAGUAGAUGCCCGAUGCCACAAGUGUUAGCUUAUAUAAAAAACAAGGUUGGUAUGCCGCAUGUCUUCACUUUCUACCACAGAGUUAUUGCGCGUUUGUAAACAUGGUGAAAGAGAUGUAUCUCUGAAGCAUAAUCAAUUCAUUAGCAAUUUCAAUGUUAGGUUGUUUUUCUUUAGCCAGCAGCGCAAGAGAAAAUAGCAUAACAAUUUCAAUGUUACGCAUUUGUGUAUUCGACAGAAGGUCCAGUUAUGUGCUCCAUUGGAGAUAUUCUUAUUCUCUUCUCAAAUUGUCGAUUGGAGUAUUUGGUCGUUCAUGUGUAUGGCUUAAAAUAUUCAACAAUAUUGUAUCGAAGUGGUUAUCUUCUCAUGUUAGACAUAAGAAUUCCUUCUA
Sequence
(XR_001547024.2):
CCGGACCAAACCCUAGCCCCCUCGCCCGUCUCGCCCGCAGCCUGGUGCACGCGCGGCGUCGCCUCUCCCUUCUACGCCGCCACGCCGUCGCCUCUCGCCGCCGCCUCGCCCUUCUUCCUCUGCGCGCGCCGUCGCCGCUGCAUCCUCGCCCUCCUCCAGCCAUCCUCGCCCUAGCCGCACUACUAGGCUCGCGCGCGCAUGACCUCACCUGCCGCCGCCGCCGCUCGCCCGCCGCCGCUUGCCCGCCGCCGCUCGCCUGCCGCUCGCCUGCCGCCGCCGCCGCCGCCGCCGCGGCUGCUCGCCUGCCGCCGUGCCGCUCCCCUCGCUCGGCACACCAGGCCACCUUCUCCCCUCUUCUCUCCUCUCAUCUCCAGGCCACCCACCGCCUCCCUCUUCCUCUCCCUAUCCUCGGUGAGCUACAGAUCCGGUUCGGGGGUCAUCGGAAUCGAUGGUCUCGGCCAUUGGUCUCCUCGCCGGUGAAUCGUUUUGAUACCCUUCUGCAUACAUUUAGCACAAAAUCCACAUGGUUCUGUGGAGAAAUUGAUGGGCUAGGAUGAGGUGUAAGUCGCAGAUUACAGAGAGGACGACUUUCAUUCUGCGCAUCUACCGUCAUACUGAACAAGUUAUCGAGCUUUCUCCUCUCUUAAUCAGGGCUGCGAUAUUUAGAUUAUGGUCUCCAGUUAUGCCAGUUUGCUUCUGGUUAUGUCCACAACAUAUUCAAUGUUGCAAAAUAAAUAUAAUGUAGCCAUGCUUCAGGUUACAGCUUCCAAUCCACAUCUUUUAAUAUUAUGUAGUGUGGCAUAUGCUUAUGAAAGUAAUCCAUAAUACUACUAUCUUCUGUUAGGCUUUCACAUUUAACUAUUUUAUUUUGUCGACAUCGUUUAACUUGGUGUUUUUUCCCCUUUUCCUAAGUGGUUGGUUGAUACUAUUACAAUAGUAUAGAUACACAUAAUGGAGCCAUGUUUCAGGUUAGAACUUCCAAUCUGCAUCUUUUAUUGUUAUGUUCACCUUCAAAUUUUCAUGAUGUUCAAAUGUGCUUAGAAAAUCAAGAACCAAAGAUGGAAGACAUUAUUAAGCUAGAAACAAAUUACAGCCUUGCAGAGUUAAAAGACUUGAAAGUGGUUGACCAUGUCUCAAGACCCAACACUUUCAUCUUAGAAAUGUUAAUUGAAAGCUUUCUCAAUGACAUUAUUUUCCAUAUAUCAAUUACUCCAACUAAUCUGGUACUAGCUACUGUAUAUGCAUAGUGAAUAGUUAGUAUUGCUUAAACAAUGUCUGGGACCGUUAUAUUCGUUGUAAGCAUAUAUUUCAAUUGUUUUCCUAUGAUGGUCAGUCAAAACCAGAUAAUCAAAAAAGAGAUAAAAAACUACUCUCUAUUGGUUAUUUGAUUUUCAGGCUUUCAAGAGAUUAGACUACUAGGCCUGCAUAAUUUGAAAUGCUAUUUAAUAAACUAUAUAUGUAUUUAAAUGUUCAGAAAUUUAGUUCCAGUUUAAAAUUUCAGGUGUAUGCAAUGUUGAAAACCACCAAAUCUGGGCAUUUCCUUCCAAACAACUUCUUUGAGAUGAAAUAGAUUCUGGGCAGUUGUUUCUUCCACCGUCCUUCAUUAUCUUUGUACUCUCGCAUCUAAAUUAUCCUAUGUCAAAUGUGCAUAUGAUUUAGUUCACAGCUAAAUGCAUCUAAAGGGCCAACACCAGAUCUUCUGCAGACGCAGCAAAAAUAUAUUAGAGUACAAAGGGUAAUUUGUCUUUGCCAAAAGAAUGGAGUUGAUUUUCCUAUCUUCUUAAUAGGAAAGAAUUCAAGUACAUAGUCUCUUCUAGGUAAUUUCUUCCAGAGUUUCAGUGCUGUCUGGGAUUACAAGCAGUCAAUGCCUCUUCUUAAGUAAUUUCCUUCAGUGUCGUCUGGGAUUACAAGCAGUAGAUGCCCGAUGCCACAAGUGUUAGCUUAUAUGUGAGAAACCUACAAAUACUUAAAAUUAGAUGCUACUGCCGAACCUACAAAUCUGUUCUCAAUUCUGAUGGGUUUGAUGCUUGCCUAAAAGUGCAGAAAAAACAAGGUUGGUAUGCCGCAUGUCUUCACUUUCUACCACAGAGUUAUUGCGCGUUUGUAAACAUGGUGAAAGAGAUGUAUCUCUGAAGCAUAAUCAAUUCAUUAGCAAUUUCAAUGUUAGGUUGUUUUUCUUUAGCCAGCAGCGCAAGAGAAAAUAGCAUAACAAUUUCAAUGUUACGCAUUUGUGUAUUCGACAGAAGGUCCAGUUAUGUGCUCCAUUGGAGAUAUUCUUAUUCUCUUCUCAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
1.63%
ME_num:
MEP:
7.11%
HE_num:
HEP:
91.06%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.65
Avg Expression:
36.03
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.55994849485146 | 2.5903057071355e-30 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.94668141519557 | 1.45937586086167e-12 |
3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.4299120682201 | 1.07588679486896e-24 |
4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.13892629455424 | 2.83459046096453e-40 |
5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.23035457077721 | 6.69254234351696e-26 |
6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.61953284015102 | 5.08525594959997e-81 |
7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.20199056029242 | 2.467186036011e-25 |
8 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.77074330862204 | 3.87909249813383e-08 |
9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.39313056415014 | 1.81642423611163e-16 |
10 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.26858587875342 | 1.47533581409207e-16 |
11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.16250278419727 | 2.2503193982998e-59 |