Chr:
Chr4
Start:
20506740
End:
20509071
Strand:
-
Ref_name:
LOC9269061
Sequence
(XR_003241904.1):
CAGCGAGGGCAGGCGGCGAGCACCAUGGACGUCGCCUCCGGGCUGUUGGACCACUGCAGGCCGUGCUCGUUCUCCGACGACAGGCACGAGCUCGGCGACGACUCCUCGUCGGCGGCCAUCGCCCUCCUGGACGACGAGUCCCCUCUCGCCGGCAGCGAGAGGUUCAGCUUCAGGUCGAUGCCCCUAGAGCUCUUCUUGUUGCUGCGGCUCAUCCCGAUCGAGAGGUAAAGUCUCGGAGUUGAAGGCAACUAUGAAGGCAAGGUUGACCCAAAUGCGAGCUCAUAACUGUGCCACUAGGUUAUUGCUUAGUACAGGAUAUGGUAUAUAAAUGUAUCUUUGCACGUAUAUAUUGCCAUUAGUCGGUGUAUGGGGGCCAAACCCAUGUGCUCUUCUUUAAUUCCAUGGUGGCAUCUAAGGAGCUUAAUUAGAGAUUAUGAGUGAAAAAUAAUCUCCACUGAGUUUUCUCGCGCCUUCUUGUUGUGGUUGCAAAGGCAAUGAGCUCCAAUGCAAAAUAGUUGGAUAUAUUGCGAUUUCGCAUAAGGUACCAAGUUAUUGGCAAAAUUCACAAUUUAAUUACUUUUUAAACUCCAGCUGCUGUUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
15.85%
ME_num:
MEP:
70.73%
HE_num:
HEP:
13.21%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.80
Avg Expression:
9.59
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -1.44510798443221 | 0.0114268897053973 |
| 2 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 1.81851450153408 | 0.0126236624672247 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP2286 | 1.97384700124229 | 0.0105963355239518 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 1.53646242856703 | 0.0240942937579516 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 1.81849060813523 | 0.00170836927355471 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | 1.44558756219138 | 0.0387215942622764 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 1.55220234633663 | 0.0281719044124676 |
| 8 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 2.89533466221564 | 0.0262378512658098 |
| 9 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 2.89523243894282 | 0.026523853144478 |
| 10 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 2.89508670906623 | 0.0263252690396799 |
| 11 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 2.19618968272247 | 0.00229065378294513 |
| 12 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 2.44222889377702 | 0.00410540868283077 |