Chr:
Chr2
Start:
6770985
End:
6779386
Strand:
-
Ref_name:
LOC9268998
Sequence
(XR_001542751.2):
AAGUAUAGUUUCCAAAUUUUUAGGACCACAAAGCCCAGCUCAGCUCAGCGUGCGCUGCGACUGCGAUGCGAGCUCAGCUCGGGGUCGAGAGAAUCGCGGGAGCAAAAGCAGCAGCCUCGGAUCGGAUCCAUGGUGGGUGGAUGGAUCCCUUGCUCCACUAGGGUUUCGUCCGAGCACACGCGCUAGGGUUUGCUUUGCUUCGGCAACCUGCCAGGCGCUCGCGGAUGGGUCGCCGCCGGCGGCAUGGUCGCUGAGCUGCGGUCGCCGUCGGCGGCGCCGGCGAUCCUUCUUAUUCUGCACGCGCGUGAGGAGCAGCCCGAGGAGUAAGCUGGCCCGUCGUCGCCGCGUGCUGGGAUCUGGUGCAGGUGCAGCGACCAUGCUCCUCGAUCAGGAGCAAAAGGAUUCAUGAGAUGAAAACAGGAGCAUAUACCUUUCCUUUGCCUGACUGAUGGAUCUUCCCGGCGCUUGACAACCAGAGCACCUCGCCGCUGCCGGCCGCCGCACCACCCCGCAAGCCCCUCGCCGCCGGCGUCCCGUCACAGCACCCGUGUGGCGGCGCUGCGCCGACAACAGGAGGAAGAAAUGCCUUUUUUGCCGGAGGACAGCGCAAAGAGAUGAGAACGAGUUGGUGAAACCUGUGAAGUGCAGUGGGGAUUUGGGAAUUGGGAGGGAUUAUAAAACCUAGAUCCGGGUGUGUUUUUUUGCACUUUGGUCACAAAUGCACAAAGUAUUAUUUGUAAUGGAAAUUUAGUUUUGUGAAAUAAGCAAUUUUGUACUGUGCGUUGCUGCAAAGAAUUAUGUAUGUGUUCAUAUGCUUAUUCGGUGGCAACAGUUGUAUAGCAGUUUGUUGGAAAGUUGGAUCCAUUUUGGAGGUGACGUUUGCUUCCUGUUUAGGCACGUAGCAUUUAAUUGCUACCAGUUUUGACAUGUGAACAGGUUCCUCUAUAUUUUCGUUACGAAUUUUAGUACUACAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
0.41%
ME_num:
MEP:
17.28%
HE_num:
HEP:
82.11%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
2nd_leaf
Tau :
0.55
Avg Expression:
19.55
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.03755183839116 | 0.0152022195198339 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.11124808717677 | 0.00951197945793991 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.69836114811661 | 3.82555687747434e-05 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.33478888327829 | 0.0113454976539121 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.73360257083097 | 0.0011070597025884 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.15350770374818 | 0.00231264273423633 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.32477272851312 | 0.000424106743088312 |
| 8 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.35637547555917 | 0.00703349135166221 |
| 9 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.35647605958082 | 0.00719780114037246 |
| 10 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.35654985149133 | 0.00705497351977562 |
| 11 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.73627556115166 | 4.94419710468934e-09 |
| 12 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -1.78893236530046 | 2.42997595828183e-07 |
| 13 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.17966174147719 | 5.79769424055375e-05 |