Chr:
Chr8
Start:
15026340
End:
15028506
Strand:
-
Ref_name:
LOC9268953
Sequence
(XR_003243781.1):
UCCAAGCUCUCUCUCUCUCUCCCUCUCUCCAAUCCAUCACCGCCGGCCGCCGUUCUAAGUUCCCCCACAACCGGCCGUCGGCUUUGUUUGUGCGCCGCCUCCAGCCGCCGUCGCCGUCGCGCGUCAGCCGCCGGAGCCGCCCCUUCCUUCCCCUCGCCGCGCCCUCUCCCUCCUCUCUCUGUGCCUGUGAAGAAGAAGGGAGGAAACAAGAAGAAGAAAGGAGGGGAGAAGAAGAAGAAAUAAAGGAAAAAGAAGAGGACUGACAAGCGGGCCCCACUGCACAAAGAUCCGGUUAACAUCACAGGAGCUGACGUGGACACAGCCGACUACGCUAAAGCCCCUGAAGAUUUCGAGGUGCAAGGCAAGACAUAAAAUCAUAUAGAAACCUUAAUCUUCAUAUUUAAAUUUGAUGCAUGAUAUUUACUCUUUUAACAUCUCAUGGGUAGAUGUUAUACUUCAGAAUAACAUUGUAGUGAUUUGGAAUAAUUGGUAAUGAUUUCAAGCAUUAUUGCAUGAGAUUAUAGAAAGAAACAUUGGUCAUCAUUUUAUGUGAAUUACUAUUCCAAACAACUUUACAAACUUAGGAAUCCGGUUAAAAUGGGCAUUUAUGAGUUGAGAUUGUGAAUAUUGAGGUUUAUGAAUGUUGAUAUAUGAUGAAGUUUGUUGGUGUGGGGAGUUUGGAAAGUUUUGGGUGGUUUAACCGGAUUAUAAUUACCCCCUUAUACCAUGGGAAAUGACAUAGUUGCGUCCAUCCACACGACCAAGUAAUUGGACUUAGCCUAGUACAUUGUCCCACUAUAUGAAAGACUGUUGGUUGGCUCACUAGGAGCAGGAUUGGGGUGAACGCAUGUGUAAGGAGGUUGGGGGCAUGGUUCACAACGGUGGAACCCGUGAAAGCAGCGACCAUGUAGCCUUGCUUAUGCCCAGCAAGUGCCCGACUGCUAAGACGGAUCAAUAUCCCACUCGUGCAGUAACUAGUAGUAAGUGGGACCUUCGAACGGCUCUGGUGUCCUCAGCCUUGCAAACUAUUGAUAUCGUGUGGGUAAAGCUGGACAGUCUCUGCAGAGGUAAAUUAAAUCAUUCAAAUGUGCUGUACUCCCGGUUCUGGAGUUGUGUCAUAAGGGUGAUUCCUACUCCUGACGUAUAAGUAAUUUUAAACAUAAAAUAUUAAUGAAGAUAAUGAGAUUUUGUUGUUGUGCUUACUUUCUCUUUAAUUCAAUACCUUAUGCUUAAGAUGAUGAUAUUUAAACUUCUGUAAUAAUAUUCAUAUCAUAUUUAUAAGUGUCUUGCUGGGUACAUAAGUACUCACUCUUGCUUAAUCUAACAUAUAGAAGAACCGUAUUACGAAGAAGUUCCAGAAGGUAGCGAGGCCUACUUCAAUGAUGAGUUUUUCUAGGCUUAGUCUCCACUCAAGCUUAUGUCUGUGAAGUUUAGUAGCUUUGGGUUUUUCUUUGUACUUUCAAAUAAGGUUGUAAUAGUUUAGAUCUUUAAAACCAUUAACAGUUGUAUAAUUAGUUUGUAUGAACAAAUUUGUAUAAUUAAUCAGAAGCUGUUUUGUAUAUCAAUCUGUGCGUGAUCGAAAUCCUGGACGAUCACGAGUGAAUUUUCGGGGCACCAAGCCUAAAUUGGGUGUCCCCACAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
77.24%
ME_num:
MEP:
18.9%
HE_num:
HEP:
3.66%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.96
Avg Expression:
9.47
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -4.04966145403846 | 7.80983393322857e-53 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -8.5445510870474 | 4.22269246221448e-23 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -8.14831172329494 | 2.85656217753987e-14 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -9.26911994726522 | 2.95024676600781e-14 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -10.3975782799739 | 1.23918858321844e-17 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -4.78312782696756 | 3.99868911110676e-70 |
| 7 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 6.41601052184607 | 1.62496397191614e-07 |
| 8 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 5.65444810845684 | 0.00503607259473658 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -9.83605539130312 | 3.24154287741429e-16 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -6.41699087170726 | 1.98604370014065e-58 |
| 11 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 5.79554746079329 | 0.000122815341530415 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -7.25944505850137 | 4.97143327329e-31 |
| 13 | 9L136 // leaf // control--/--9L136 // leaf // salt | 2.53372448161058 | 0.00451038592313953 |
| 14 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 6.30535579310982 | 2.45724377347352e-05 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -8.5637254457259 | 1.73456912621534e-30 |