Chr:
Chr8
Start:
14681260
End:
14684371
Strand:
-
Ref_name:
LOC9268948
Sequence
(XR_001548122.2):
CAUCAGAGUAGCAUAGCAGAAACAUCGCAUUGGUUCCGGUUAUUACAGUACAAUAGAUACAGCUCAAGACAAGCCUCGAGCGAUAACAACAAAAUAAUAUACAAACCCCAAAAGCUCAGCAAAUAUACAGCACACUAGAAAAUUCACAAGUGCUGCUACAGUUAUUACUACUACUCAUAUUAACGUUAUUGCUACUACUACAAAUACUACCGCUGCCACUGCUACUACCAUCACCACUACAUCAACUAUAUGAACCAUGCAUAUUAUACACUAAUUAUCAUAGUCAAUCUCAGCAUCAUCGUAGAGUCCUUCCCGGUUGUCAUCCAUAACGUGAGUUCCUUCACUUCCAGCCAUAUAUUCUUGUUCAACAGAUUCUAAUGAUUCAACAUCUAUAUACAAGGAAUUAACAUAGGGGAUGAGUACAAAUGGUACUCAACAAGCCCAUCAAUAGCAAGAAAUGUGUGAAUGCAACUAUCUCUAGAAUCCAAGAUUCUUCAAAGAAUUCAUAAUGUUUUUGACAAAUAUUUGUUGCAAAAAUUCAAAUUUUAAUUAUAAAACACUACUGCAUAUAAAGUACCACAGGGUAGAAUCUCCGAUAGAUCCCUUUCCUGCCGCGUUCGCAGUUUCUACCCGAAACAGGGAGUGACAUAUCACAAUUCAUACACUCUGCAGAGGUGUGUCGCUAUACCCAUAGACGCCUUAAACCUUUUAACGCCCGCGCUACACAGCCACCACGCCAGCGCCUAAGCACACUUCAUGGUGUAUGCCGGCAAGGAUAAGGUCACAAGCUUUUCAUCAAUCCCAUUUGGCAAUAAUCUCUGCGGGUGAUUUCUGCAACAACGGCGAAUCAUCGGAUUCCGCAACAACGGCGAUCCACAUCAUCUAAUCAGAUUCCGCAACAACGGCAACCCUCAUCGCUAGCCCACGCUCACGGGAUUCGCGGAAGUCCUUAAGCCCGCAGGAUAAAGCCAUUAAGAAAGAACUACUAAACCAGCCUGUCCCAUUCCAGGUCAUAUGGUCGACAUGAUCGCUACGGCGCUUGCAUACCUUACAGCAGUUGUUAAUUAACCUUAUGAUGUUAAGCAUAUACAGCUGAACCACACAACAACUAAGUUCAGACUGCCAAUUAUCAAGAUCACCAAAGAACUGAUCCACAGAUUCACAUGUACAAUAUUAACAUUCAAAAAUAAAUUUCUGGUUUUCUAUGCAAUGGGGAGAGAUAUAUAGGUUGCAAAUAUUUGAAAUAACUAAGCAAUAUGAUCAAGAGAUGGACUUGCCUGGAUAGAAAACACCAUGAAUACCCUCAGAUUCAGUCGAAAUGAAUGAUUCCUCAGGAACUUGAACUUCGGAAAAAAAAUACUGAAGUCCGAAUAAGGACAUAUUCCGAACGCUUAAUUUACCGCAUGCAAUGCAUAUGAAUUGUGUAUUAUGAAUGGCAAAUAUAAUGAUCAGGUGCUGUUAUAUAAAUUUAUUUUUCUCUGCUCAGAUUUUAUUUUAGCACUAAUGCCAAAAAUUUAGAAUCAUCAAUUUGUAUGCUAUAUAAACUUGCUCACAUUCUAUUCUAAAUCUAAAUCUAAUUUCCUGGAGACUAUAUAUGAUCAAUUUAGUCCAGCCCACAAAACCAAAGCCCAACCAGCCCACUUUCUUUCUUCUCAUCUUCUUCUCUCGUUAUCUCCUUCUCUCCCUCACGCCUUCUCUCCUGUGCCGCCAUCCCCAAACAGUGCCGUCAACACCAACGCUCUCCCUCAGGCCGGCUGCCACUCCCCACUCCGGCGAUCUCCCUAGCAGCUGCCCCUGCAGUGAUUUGUUCUCCCUAGUUCCCACGAGCUCAUAUCCUGCUUUACCUCCAUCCUCUACUACCACCUCUCCUCUCUCAAGUAAUCUGAGCAUUGCUGUCCUUCAUGACUAUUGGUACUCAACUCCUGUGGUGGUCGCCGUGGAGACGGCCAAUACCUCAAUGGCAACUGCGGCAGCCACAACCCUCACCACUUCUAUUGGUUGGUUGAUUCUACUGAAUCAGCGUCUCCUCCUUCAGCUGGGGUACCUGUUCCUAAUGGAGCUGGAGCCCCUGCUCCACCUGUUGUUGGGUGAUUUUGCCCUCUUGUAUUUUUCUUUUCUUCUCUAACUCUCUGGUUAUGGUGGUUCUUCUUGCUACUGGUUUUGGUCUCUACGAGGAAAACGAGGCUCGGUCAGGAUGGAGUUCACACUGAUAUGGUUUUUGUCACAGGGACAUGGUUGACUACUAGGUGACUCACCUACUAAGGUUUUACUGGUGGUCUCCCUGUUUGACACCUAAGCAUGGUUUAUUCGGUGGAGGCUCAGCAUAAUUUUUCACAGAUUUGCAAUUAAAUAAAAAUCUAGUGAAAAGUAUGAUAUUUGUAACUUUUGCAUUAUAGUACCAUAGACUUUAAAAAUAUGGAGAUUACUUUGAGUUUAGGGACUGAUUUUCAAUUGCCCAAAAACUCACAGUUUACCUAAGAAAUAAAUAGUUUUGGAAGCUACUAAGAGAUGGCUAAUGUUACUAAUUUUGUGCCCCAAAAUGGUUUGAUUGCAAAAUAUGUGACAUCAAGCAACUCUAAAUUUUCUCUUUUGCCUAAAUCUUAUAUUUAAAAUCUCCUAAAGCAAUAAGGUGUGGUCACAGAUCACACCAACAUUUUUAUUUAAUUUUCAUUAUUUCUAUUUUAGAUGAAUAAUGUAUGAGAUGCGUUUGAUGUAUGCAACAACACUGUAUAAUGUAUAUGUGAAGAAAUAAAGAAUUUACUUAUGUGUCUAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
35.57%
ME_num:
MEP:
63.82%
HE_num:
HEP:
0.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.68
Avg Expression:
2.27
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.34953705236274 | 0.00698389371813519 |
| 2 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.12142251266576 | 0.00511484426442511 |
| 3 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 3.17605674469286 | 0.00534495172251364 |
| 4 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | 1.51748384853359 | 0.013069098006485 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -1.7238257116629 | 0.00175197628244391 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.65359943915712 | 1.70512489330597e-06 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | -1.00960296395499 | 0.0440776810824407 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.44423942032779 | 0.0016503880129412 |
| 9 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | -1.16916683323249 | 0.0493357561618324 |
| 10 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.83067723211801 | 2.89318657702636e-05 |