Chr:
Chr4
Start:
4382057
End:
4385555
Strand:
+
Ref_name:
LOC9268906
Sequence
(XR_001544910.2):
AAGAAAAAAAAAAAGGAAAACCUAUCCUCCUGCGCGGCCGCCGGCGCCGCUCCGCUCGCGCGCGGCUGCGCCCGCCCCUCACGCGUCGCCGGGUCGCUGCCUCCCGCCGCCGCCUCUCGUGCGAGCCCGCCGCCCCAACUCCGCUCGCCGGGCUGCGCUCCCGAUUCCCCUAGCCCGCUACCUCCCGCCGGAGCCGUCAUCGAGCGGGCCACAUCGCCGCCGCCGCCUCCUACCCCCACGCCGUCCAGUCCCCCACCCCUACCGCCUUCGUCGAACCGCCGCGGACUCCGGUUCCCGAUCCAACCGCCGACGCCGUUCUUCUCAUCUACUAGCGCUGGGAGGUCAUCCGCCGUCGCCGUCACUUCGCGCAGGGCGCCCAGCUCCUCGCCCGUGCGCGCGCCGCCGCCGCUUCCACUGGCGCGGGGACCAAGAAGCCCCCCGGCCCACUCGCCCGCGCGGCGCUCGCCGAGGCCGACCGUGCCAUCGCUUCUCCUCCUCCCCACACCGCCCUCACCUGCGCCAUCUCCACGGCCCUCCCAGCUCCACCCCCCCGCCCUGCCCUCCACAUGCCCGCCGCUUCCGCGCCGCGCCGUCGAUCUCCGGUGACGUCGUGCCCCAAGCCAUUGGUUAUCCCUUCUCAUGCUGAUCUGAUUUUUCUGCUUUGCCGUCUUUCCUUCAACACUGCUGAACAAAUGGCUUCGAUCUGUGUGAGGGUCUUCACGCUAUCGUCCACCUUCUCUACCCCGCCGGUACAGGAAGACGACGCCGGAGCACGGGGCAACGUCGAGGAAGAUGACUGACAGUACAUUGCUUUGUGCCAUGCUCCUCUACUGCACCGUGCGACUGUUUUUUUUCAGGCUGGGAUGUGGGAUCGAGCACACCGUGAUGAUUGGGAACAUUUCCAAGGACAGAUUGAUGGAGUAAGCGUUUUUUUGAUGCUUCAAGGAUUCAUUUUGUUGCCUUCAAUUGUAACAGGAGAAAUGCCAAUAAGUGAAGGCAUUAGAUUCAAUCCCAAAGUUUGUCCUUUUGCUUCUAAAGCAGUAGUGCCAGACCAUUCAGUAAAAUUCAUCUGAAUUCAAAGUGUUCCAACUGUGGCGUCUUGCUUCUGAACAGAUCCCCAACUUGCACUUGAUGCGAUGGUUCCGUUUUGCUGCUAAAAUUCAGGUGAUGCAAAUGUAGUAAAAGAAUGUAAUCGCAUUAACUGAUUUGAUCAAAGCACAAAACAGAAGUGCAAUUGAUCACCAUCUGCAGUACAGGACAGCUUUAUUCGUUGUAAGGUGCUAUGACUGGACAUCAAAAGAUGCUUGCAACCUAAUCAGACAAUCCAUUUAAACCUAACUGAAGAAUAUAACAAAUCAGGCUUCCUGCUUUGCUUGAUUUCCAAAUUCAUGUAGGCAGAAACAGUAUGGAUAUCACCGAUCAUCAGCACGUAAGUUUGGACAGUGCAACAAAACUUGUCUGUAUUUCCUCGAUCUGAAUGCGUGGAAGGAAAGGAAAUUUUCAACUUGGAGAUCUAUCUGCUACUGAUGAAUUCCCGCUUCUCAGUUUACAUGGAGAUGAGUUAAUCUGGGUAGUCAGUGGAAGACCAUAAAAAGAAUGUUGUUGUAUUCAUGAUGCCACGUACCACCAAUCAUAUACCGCUGGAAUAUUUACUUCGACUUCCAAAUUAAUUAUCAUGUAACACUCUUAAACUAUAUGAAAUAUUCCCUUCCAAUUAGAUUAAUCAUUUUUCAAAGAAA
Sequence
(XR_001544911.2):
AAGAAAAAAAAAAAGGAAAACCUAUCCUCCUGCGCGGCCGCCGGCGCCGCUCCGCUCGCGCGCGGCUGCGCCCGCCCCUCACGCGUCGCCGGGUCGCUGCCUCCCGCCGCCGCCUCUCGUGCGAGCCCGCCGCCCCAACUCCGCUCGCCGGGCUGCGCUCCCGAUUCCCCUAGCCCGCUACCUCCCGCCGGAGCCGUCAUCGAGCGGGCCACAUCGCCGCCGCCGCCUCCUACCCCCACGCCGUCCAGUCCCCCACCCCUACCGCCUUCGUCGAACCGCCGCGGACUCCGGUUCCCGAUCCAACCGCCGACGCCGUUCUUCUCAUCUACUAGCGCUGGGAGGUCAUCCGCCGUCGCCGUCACUUCGCGCAGGGCGCCCAGCUCCUCGCCCGUGCGCGCGCCGCCGCCGCUUCCACUGGCGCGGGGACCAAGAAGCCCCCCGGCCCACUCGCCCGCGCGGCGCUCGCCGAGGCCGACCGUGCCAUCGCUUCUCCUCCUCCCCACACCGCCCUCACCUGCGCCAUCUCCACGGCCCUCCCAGCUCCACCCCCCCGCCCUGCCCUCCACAUGCCCGCCGCUUCCGCGCCGCGCCGUCGAUCUCCGGUGACGUCGUGCCCCAAGCCAUUGGUUAUCCCUUCUCAUGCUGAUCUGAUUUUUCUGCUUUGCCGUCUUUCCUUCAACACUGCUGAACAAAUGGCUUCGAUCUGUGUGAGGGUCUUCACGCUAUCGUCCACCUUCUCUACCCCGCCGGUACAGGAAGACGACGCCGGAGCACGGGGCAACGUCGAGGAAGAUGACUGACAGUACAUUGCUUUGUGCCAUGCUCCUCUACUGCACCGUGCGACUGUUUUUUUUCAGGCUGGGAUGUGGGAUCGAGCACACCGUGAUGAUUGGGAACAUUUCCAAGGACAGAUUGAUGGAGUAAGCGUUUUUUUGAUGCUUCAAGGAUUCAUUUUGUUGCCUUCAAUUGUAACAGGAGAAAUGCCAAUAAGUGAAGGCAUUAGAUUCAAUCCCAAAGUUUGUCCUUUUGCUUCUAAAGUAGUGCCAGACCAUUCAGUAAAAUUCAUCUGAAUUCAAAGUGUUCCAACUGUGGCGUCUUGCUUCUGAACAGAUCCCCAACUUGCACUUGAUGCGAUGGUUCCGUUUUGCUGCUAAAAUUCAGGUGAUGCAAAUGUAGUAAAAGAAUGUAAUCGCAUUAACUGAUUUGAUCAAAGCACAAAACAGAAGUGCAAUUGAUCACCAUCUGCAGUACAGGACAGCUUUAUUCGUUGUAAGGUGCUAUGACUGGACAUCAAAAGAUGCUUGCAACCUAAUCAGACAAUCCAUUUAAACCUAACUGAAGAAUAUAACAAAUCAGGCUUCCUGCUUUGCUUGAUUUCCAAAUUCAUGUAGGCAGAAACAGUAUGGAUAUCACCGAUCAUCAGCACGUAAGUUUGGACAGUGCAACAAAACUUGUCUGUAUUUCCUCGAUCUGAAUGCGUGGAAGGAAAGGAAAUUUUCAACUUGGAGAUCUAUCUGCUACUGAUGAAUUCCCGCUUCUCAGUUUACAUGGAGAUGAGUUAAUCUGGGUAGUCAGUGGAAGACCAUAAAAAGAAUGUUGUUGUAUUCAUGAUGCCACGUACCACCAAUCAUAUACCGCUGGAAUAUUUACUUCGACUUCCAAAUUAAUUAUCAUGUAACACUCUUAAACUAUAUGAAAUAUUCCCUUCCAAUUAGAUUAAUCAUUUUUCAAAGAAA
Sequence
(XR_001544912.2):
AAGAAAAAAAAAAAGGAAAACCUAUCCUCCUGCGCGGCCGCCGGCGCCGCUCCGCUCGCGCGCGGCUGCGCCCGCCCCUCACGCGUCGCCGGGUCGCUGCCUCCCGCCGCCGCCUCUCGUGCGAGCCCGCCGCCCCAACUCCGCUCGCCGGGCUGCGCUCCCGAUUCCCCUAGCCCGCUACCUCCCGCCGGAGCCGUCAUCGAGCGGGCCACAUCGCCGCCGCCGCCUCCUACCCCCACGCCGUCCAGUCCCCCACCCCUACCGCCUUCGUCGAACCGCCGCGGACUCCGGUUCCCGAUCCAACCGCCGACGCCGUUCUUCUCAUCUACUAGCGCUGGGAGGUCAUCCGCCGUCGCCGUCACUUCGCGCAGGGCGCCCAGCUCCUCGCCCGUGCGCGCGCCGCCGCCGCUUCCACUGGCGCGGGGACCAAGAAGCCCCCCGGCCCACUCGCCCGCGCGGCGCUCGCCGAGGCCGACCGUGCCAUCGCUUCUCCUCCUCCCCACACCGCCCUCACCUGCGCCAUCUCCACGGCCCUCCCAGCUCCACCCCCCCGCCCUGCCCUCCACAUGCCCGCCGCUUCCGCGCCGCGCCGUCGAUCUCCGGUGACGUCGUGCCCCAAGCCAUUGGUUAUCCCUUCUCAUGCUGAUCUGAUUUUUCUGCUUUGCCGUCUUUCCUUCAACACUGCUGAACAAAUGGCUUCGAUCUGUGUGAGGGUCUUCACGCUAUCGUCCACCUUCUCUACCCCGCCGGUACAGGAAGACGACGCCGGAGCACGGGGCAACGUCGAGGAAGAUGACUGACAGUACAUUGCUUUGUGCCAUGCUCCUCUACUGCACCGUGCGACUGUUUUUUUUCAGGCUGGGAUGUGGGAUCGAGCACACCGUGAUGAUUGGGAACAUUUCCAAGGACAGAUUGAUGGAGUAAGCGUUUUUUUGAUGCUUCAAGGAUUCAUUUUGUUGCCUUCAAUUGUAACAGGAGAAAUGCCAAUAAGUGAAGGCAUUAGAUUCAAUCCCAAAGUUUGUCCUUUUGCUUCUAAAGAUCCCCAACUUGCACUUGAUGCGAUGGUUCCGUUUUGCUGCUAAAAUUCAGGUGAUGCAAAUGUAGUAAAAGAAUGUAAUCGCAUUAACUGAUUUGAUCAAAGCACAAAACAGAAGUGCAAUUGAUCACCAUCUGCAGUACAGGACAGCUUUAUUCGUUGUAAGGUGCUAUGACUGGACAUCAAAAGAUGCUUGCAACCUAAUCAGACAAUCCAUUUAAACCUAACUGAAGAAUAUAACAAAUCAGGCUUCCUGCUUUGCUUGAUUUCCAAAUUCAUGUAGGCAGAAACAGUAUGGAUAUCACCGAUCAUCAGCACGUAAGUUUGGACAGUGCAACAAAACUUGUCUGUAUUUCCUCGAUCUGAAUGCGUGGAAGGAAAGGAAAUUUUCAACUUGGAGAUCUAUCUGCUACUGAUGAAUUCCCGCUUCUCAGUUUACAUGGAGAUGAGUUAAUCUGGGUAGUCAGUGGAAGACCAUAAAAAGAAUGUUGUUGUAUUCAUGAUGCCACGUACCACCAAUCAUAUACCGCUGGAAUAUUUACUUCGACUUCCAAAUUAAUUAUCAUGUAACACUCUUAAACUAUAUGAAAUAUUCCCUUCCAAUUAGAUUAAUCAUUUUUCAAAGAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
28.46%
ME_num:
MEP:
8.33%
HE_num:
HEP:
63.01%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.77
Avg Expression:
36.75
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -9.6226076202056 | 1.37235703158283e-12 |
| 2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.33481929237808 | 9.67398660132886e-08 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.02958178321842 | 1.50609882700293e-07 |
| 4 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -8.71532005363902 | 2.34906430935549e-08 |
| 5 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.26639980937458 | 1.73511996106955e-05 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.03250853542032 | 5.82847737200481e-05 |
| 7 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.2664869934397 | 1.83408045805319e-05 |
| 8 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.26657716184358 | 1.74775658054635e-05 |
| 9 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.28454086165889 | 3.72485364081492e-16 |