RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC9268905

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr8

Start:

9976975

End:

9979470

Strand:

-

Ref_name:

LOC9268905

Sequence
(XR_001548502.2):

UCGGCCGACCUCAUCCCCACCAUUUUCGUCAGGGUCGGCGGUAGGUGGACCAGGAGCACACGGCUCCAGCCAUGGCGCCGCCUCCCACGCCGGUCAUCCUCAUCUGCUGCUUCUUCCACAAUAGAUCCACCGUCCCCCUACGCCGUCGCCGCGGAUCAACACCUGGGAGGUUCCAUGGCCACAGAUCGUGGUCGGGACCGGCAGCAGCGGACUUCACCGGUGCGGGCGUCGAGGAGAGCCACCUCAGCUUCUUCCAGCGCUGGUGGUCGUCCUCCCCAACGGCCUUCAUCUUCUCGCCGUGAGAGCCAGGCGGCGAGUCGGGAUGGCGGUGGCGGGGCCAUCUUCUCUGCCUCCCCGCGCCGGUGGAUGAGGAACAGGAGGGGAUGGGGCUGGCACGUCGUCCGGCGGCGGCGCCUGCGGUGAUCCGGUCCCUGCUCCCCCGCCUGCUGUUGCUGCUGCUGCUUUCCUCUCUUCUUGCUCUGGUUUUUCUCCUCUCAUGGCGGUUGCUCUGUCUAGAGAUUACUCCUCCUUUGAAAUCCUUUUCAGUUUUGGUUGGAUUAAUUGGAGUUCGCUUUGCUGCGCGAUUGCAAUUGUUCUUGAUUGAUUUGUUUGGCUCAUAAUAGUCCAAGGCGCUGUCCUUGUUGCUCUUCGCAUACUGAUUCCUGGUUAAGAAUGGUCUCCGCUUUGUGCACUUGUUCUUCUAUCUCCACGAAGAAAAUUGGCUUUCUCAAAAACCUGCAAAACUGGAAACAAGAAUUGCCUAUGAUUAGUAUGUUGCUCGCAAACGGAAUAGAUCGAAUCAACGCAGUUGAUGGAUACAGUACAUACUCCUUGCUUGUCUCUGGCUUUGCCUUCUACUGAUUGGUACAGAUGAGCCUGGGAAGCAAGUCCGGAGUGCUGUCAAGAUCAAGAACAUCAGCAAGUCUCAUAUAGCAUUUAAGGUUCUCUCAUAUGUUGGCGGGUUCCAGGGUGGAGAAGGUUGGAUCCUCGGUGGAGCAGGCCAAUGCGACCAACUCCGCCAUGGAUGUAGCUGGCAGUGGGAUUUUGACGUCGACCGUGAGUCUUCGGCACCGGCGCUGGUGGUGGUAUUACGCGAGUUGGGAUGUACCCCCUUCAUCUCAAUAUGUCGCAACCUCCUCUAUAUUCGUAGUUUUAGGAUUGAUCUAAUCUGAUCCUAGGGUGCAACAUAUGGCGACGGAGGGAGUAGUCAUUGGUUGCAAUUUUCUUGUUUUUUUUAUCAAGAUGAAUAUGUGUAUGUCUAUUUCCCAUCUGUAAUUUUUAUUGGUCUCGAACCAGCCUAAUAUUGUAUUCAUGCUGUGUAGGAUAUAUAAUUUGAAAAAAAAUACUCUUCUCGUA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

50

LEP:

10.16%

ME_num:

10

MEP:

2.03%

HE_num:

431

HEP:

87.6%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot_apical_meristem

Tau :

0.49

Avg Expression:

35.44

Tip: OSA-LNC9268905 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN1.060488740610788.22805059340626e-11
2IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB)-7.968268903574146.21679683459208e-06