Chr:
Chr8
Start:
8849956
End:
8854345
Strand:
+
Ref_name:
LOC9268865
Sequence
(XR_001548138.2):
CCUCCAGGCUCCACCUCCCCUAAACCCUAGCCGCCACUCGACCGAUGUUCCCCUCUUGCUCUCUCCCUUGCCCUCACGGCGGCGGCGGCGGCCGGCCAUCGCUCGCUUUUCUCCGCCGUUGACGACCAGUCCCCUUCCUCCUCCAUCGCCCCUCUCCUACGGAUCGGAAAUGAGUUCUCGUAUAUCAAAGGUGCCGUGCCGAUAUGGAUGGACCCAAUUUAAAUGACGUACUCCCUCCAUAUUUUUAUAUUUGGUGCUGCUAACUUUUCACAUCAGAAGUUUGACCAUUAAUCUUAAGGGAUUAGUUCGAUGAAGAGCCGAUGAAGAUGAUGAAGAAAAAGAUGUAAUACAAUGAGGUUUACACUAUGAUCCAAGCCUAGAAGUGACGGAAGAUGUCUAGAUGUGGUGAAGAGUUGGCAAUACUUGGCUACGCGAUGGACCAUGCAUGGGAGAAGGGCAAGCGGAGGCUUGACGCCAAAGGACCCAACUCAGUGCUGGAGGAGCAAGUGCUUGGCUGAACACCGACGAACCGAUCGAGGCCAUGGGAUGGAUGGCACAAGUUGCUGAGGAUCAACCCUUGGUGAAGAAACAGCGUAAGAUGUAAUGUCGAAGAACAUGAGGAUGUGAUUUGUUGAUGAACAUCAAGCCAAAGGCCAUUCAGCAUUGAUCAAGGCAAUGAAGAAGAUGGCGUAAAGGUAUUCGUAUUGGUAUAGUUUUUCUAUUUGCUCUUGAGUUGGUAGGAAAGCAAGGGGAUGUUGCCUUGAUGUCUAGGGAUGAGUUUGGUGCUCAAAAUAUUUUCUAAAA
Sequence
(XR_001548139.2):
CCUCCAGGCUCCACCUCCCCUAAACCCUAGCCGCCACUCGACCGAUGUUCCCCUCUUGCUCUCUCCCUUGCCCUCACGGCGGCGGCGGCGGCCGGCCAUCGCUCGCUUUUCUCCGCCGUUGACGACCAGUCCCCUUCCUCCUCCAUCGCCCCUCUCCUACGGAUCGGAAAUGAGUUCUCGUAUAUCAAAGGUGCCGUGCCGAUAUGGAUGGACCCAAUUUAAAUGACGUACUCCCUCCAUAUUUUUAUAUUUGGUGCUGCUAACUUUUCACAUCAGAAGUUUGACCAUUAAUCUUGGAUUAGUUCGAUGAAGAGCCGAUGAAGAUGAUGAAGAAAAAGAUGUAAUACAAUGAGGUUUACACUAUGAUCCAAGCCUAGAAGUGACGGAAGAUGUCUAGAUGUGGUGAAGAGUUGGCAAUACUUGGCUACGCGAUGGACCAUGCAUGGGAGAAGGGCAAGCGGAGGCUUGACGCCAAAGGACCCAACUCAGUGCUGGAGGAGCAAGUGCUUGGCUGAACACCGACGAACCGAUCGAGGCCAUGGGAUGGAUGGCACAAGUUGCUGAGGAUCAACCCUUGGUGAAGAAACAGCGUAAGAUGUAAUGUCGAAGAACAUGAGGAUGUGAUUUGUUGAUGAACAUCAAGCCAAAGGCCAUUCAGCAUUGAUCAAGGCAAUGAAGAAGAUGGCGUAAAGGUAUUCGUAUUGGUAUAGUUUUUCUAUUUGCUCUUGAGUUGGUAGGAAAGCAAGGGGAUGUUGCCUUGAUGUCUAGGGAUGAGUUUGGUGCUCAAAAUAUUUUCUAAAA
Sequence
(XR_003243795.1):
CCUCCAGGCUCCACCUCCCCUAAACCCUAGCCGCCACUCGACCGAUGUUCCCCUCUUGCUCUCUCCCUUGCCCUCACGGCGGCGGCGGCGGCCGGCCAUCGCUCGCUUUUCUCCGCCGUUGACGACCAGUCCCCUUCCUCCUCCAUCGCCCCUCUCCUACGGAUCGGAAAUGAGUUCUCGUAUAUCAAAGGUGCCGUGCCGAUAUGGAUGGACCCAAUUUAAAUGACGUACUCCCUCCAUAUUUUUAUAUUUGGUGCUGCUAACUUUUCACAUCAGAAGUUUGACCAUUAAUCUUGGAUUAGUUCGAUGAAGAGCCGAUGAAGAUGAUGAAGAAAAAGAUGUAAUACAAUGAGGUUUACACUAUGAUCCAAGCCUAGAAGUGACGGAAGAUGUCUAGAUGUGGUGAAGAGUUGGCAAUACUUGGCUACGCGAUGGACCAUGCAUGGGAGAAGGGCAAGCGGAGGCUUGACGCCAAAGGACCCAACUCAGUGCUGGAGGAGCAAGUGCUUGGCUGAACACCGACGAACCGAUCGAGGCCAUGGGAUGGAUGGCACAAGUUGCUGAGGAUCAACCCUUGGUGAAGAAACAGCGUAAGAUGUAAUGUCGAAGAACAUGAGGAUGUGAUUUGUUGAUGAACAUCAAGCCAAAGGCCAUUCAGCAUUGAUCAAGGCAAUGAAGAAGAUGGCGUAAAGUUGGAAAUGCUGGAAACACCCUCCAACAAUGACAGUGCAUCUGGAGCGUGCACGUGGAAGACCAGGAUGAACCUGGGCUGGCCCAUCCGGCCUCCACUUUUGGCAGGUGCGUCUUUUGUUGGGCUUUAUUCUCCGUGAUGUGGUGGUUGGGCCUAUUUGAUGUUAUUUUAUUGGAUAUGUAAGCCCAUCCACCCAUGAGUCUACCUCU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
83.33%
ME_num:
MEP:
14.84%
HE_num:
HEP:
1.63%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.88
Avg Expression:
4.79
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.84905630145625 | 0.00652783646167647 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -3.17057244100304 | 0.0343467856091139 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -3.41165106769065 | 0.0205876773808469 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -5.43902711339384 | 0.000688627727140948 |
| 5 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 3.69577232890756 | 0.0301715006229632 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -5.83913399465244 | 9.21852309953922e-05 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -3.34831243812608 | 0.0114287589302718 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -4.61984813954197 | 0.000350723304618161 |