Chr:
Chr12
Start:
23314759
End:
23315495
Strand:
+
Ref_name:
LOC9268760
Sequence
(XR_001542241.2):
GAACCGUCAGAAUUCAGAAAAAGAAAUCAGUCAGACUCGUCUGAAUUUCUGAAUUAUUCAGAGUUUCAUCCAUUCCACUAUUCGCUAGUGCUAAUCUACGCUGUGAUAGGGAGGAGGAGGAGGAAGGGAUCGAGCAGGUUGGUUAGGUUUUACCAGGAGGGGACGAGGUUGGCGGCGAUGAAGAGGAGGUAGCCGGAGGUGCCGAGCACGAGCGCGCGCCUGGACCCCAUCCGCCGCACCACCGGCGAGCCCACCACCGAGAACGCCGUGAACGACGUGUACAGGAGCCCCAGCGACACCGACCCCAGGUUCUGGGCGGCGUGGUAGGCGAGGAAGACGAAGAGGAAGGCCGAGCUCAGCAGGUGCAGGUCGCGGGUCUGGGACGUCGCCGCCCUCGCCGCCGCCGCGGCGCCGCGUCUGCCGGAUACCAGCGGGGCGGCCUCCUCCUCCUCCUCGUCGAGGGCCACCGCGAGCUCGGCUCCGGCGGGAGCGUGGCCGUCUUCCAUGGCGGAUUUGGGGGGAGGAGUUGGUGGUGGCGUGGCUUCGGUGCCAAACUGCGCGAGCACUCUGCUCUGCUUGUGAUUUGGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
12.6%
ME_num:
MEP:
78.05%
HE_num:
HEP:
9.15%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.73
Avg Expression:
4.37
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 3.17288011072522 | 0.0186055369371289 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 3.46414464793859 | 0.012845665447152 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 3.16639155975475 | 0.0170134077894441 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 3.01250198078529 | 0.0219327860338193 |