Chr:
Chr6
Start:
1211884
End:
1212882
Strand:
+
Ref_name:
LOC9268694
Sequence
(XR_001546668.2):
UUUCUGUCACCAAUGAUUCCUCACGUCCAUUUGCUCAUUUUCUCACUGCUUUAAUCAGAGCAGCCAUUUGCAGUCGAGAGCAUCAGCAGGCGCGGAUAAUGGCUUCAGCCGCUCUUCCUCAUCCCAGGCGUCUCGCCUGAUGGUCAUCGGCGUGGGGAACGAGACCAGCAGCCGCCCGUGUUUGAGAUCCGAACAGAAGAUUUCUCAAGUGUACAAAAAAGGAGAAGCCGGCAUGUAAGGUUUAGAUAUGGAAAGACAUCUUGCAAGAGUAUGCCGACGAGCUCCAGAACUACAGCAUGUCGAGGCAGUACAGCAUGAAUCUUUUUCCUUUUUUUACGUGGACAGAAGAUCUUAUUCGGUGUUGUUUAUGUUUUGACCCUCUCCCAACAUGCUUGUUUUUCACUUUUUUUUUUUUUUGCAAGACACUUCUGCGUGCAAGGUUUGGAUAUAGGAAGACAUUUUGCGAGACUAUGUCAACGAGCUGCUAAAGUACAACAUCGGAUGCCCCCAUAAUCCCUUCAGAGCAGUUAUCGAUUCUUUGAAGGUUGUGGAGGAGAAAAAUCGCCAGCUUGUUCUUCUUCAAGAUGAAAUCGAAAGAUGCCACCGUUUGCUUCAACAGAAAUUCGACGACACCGAAGUCCUGGUUGAGCCUCUCGCGUCAUGAGGGCUCGUUCGAGAAGGAUAUUCUCUAUGUUUAUUAUUGUUGUAGUCUCAUUUCUUGUAACCAAAAACCUUAUAUUUGGUUCCUAGUUUAUUGUAAUUAUUUGUUACUAAUAACUUCUUAGCGUCCAGUGUAGUAUCAUGGUAAUCGCCGUGUUACUAGGGGGCGACAAUCGUAUUGUGGCAGAUAUAAGCCAAGUUAAUUAAGGUGCAAAUUUGAUGUGUUAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
60.37%
ME_num:
MEP:
22.15%
HE_num:
HEP:
17.28%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.94
Avg Expression:
36.12
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 4.23897679327501 | 5.18665383806092e-09 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 3.29529596583604 | 2.3165524067285e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 5.01138831319324 | 2.54969578082792e-14 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 4.84326443574017 | 4.04675704895942e-10 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 5.01180112803105 | 2.17209594285982e-13 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 3.37123100466451 | 5.84974324345835e-05 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 3.7719712065744 | 1.46989140484619e-07 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 4.73883389997109 | 1.14706481142357e-12 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 4.54058680116217 | 2.01754498373673e-11 |
| 10 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -4.551825895961 | 0.00116064855856245 |
| 11 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.12188435373629 | 0.0458747272684532 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 4.03882695877815 | 4.19271232301685e-08 |
| 13 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -3.7357476033779 | 0.0193953792151581 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 5.29486951271896 | 7.01278375732734e-17 |