Chr:
Chr10
Start:
7250457
End:
7252501
Strand:
+
Ref_name:
LOC9268637
Sequence
(XR_001540405.2):
AAAAAACGAACGAAAAAAAAGAGAAACAGGAGAAACGCCCCUGUAGCCCUAGCCGCCGCACCUCCUGCGCUCUGCUGCCGCCGCUGCUGUUCCUGUCUUCGCCGGCGCCGCCGCUGGUGCAGCCGCCGCCGGUCGCCACAGCCGUCGUCGUCCACAGCCGGUCGUUGGAAGGAGGGAGAGAAGGCAGAGACGAACAGGAAGGAAGGAAAGAAGGGGAAAUUUGAUAGAAGAAGGGAAAUUUGGGGAAUUUGGUACCUAAUGACAUUGAUCGGCAUGGGGCGGGAGUAGCACCCUUGGACUACACAUUAUUAUUGCACACAACUGAAAUUUAGUUUUAGACUAUUUUUUUGCUCAGCAUAAGUUUUGCAUAGAACUUAUAAAGGUCAUUUAAGGUUCUGAUCCUUAUUUUUCACGUGGGAUUUGUGGAGCUAGGAUGGUUUGGAUUGUGUGGAUUAUAUCGGUAUUGACCUUUCUUAUCACUGCCUGUCGUGGAUGUCUGUAUUUUUAGGGGAGACUCUGCCAAAAUUUCUAAUAAUUUUGGGACUUAGUUUUCGAGUGUAUUUGUAUUUUGGUGUGGCAUUCUAGGUACGUGGUUACCUGGGGUGUUAUAGGGCAGGCUUCACUCAAGGUGGAAAAAAAAUGAAAACAGUAAAUGUGUAUUAAUAAUGAAAAAUUGGAUCCCCUAUUACACACCCCUCGGGGUCUUUUUAUAGUUUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
5.28%
ME_num:
MEP:
43.9%
HE_num:
HEP:
50.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_elongation_zone
Tau :
0.66
Avg Expression:
15.32
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.35102408020991 | 0.000956588058159331 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.58386475892448 | 1.68898995039874e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.07673297118036 | 0.0164639173637325 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.50974648740283 | 3.08573030630799e-05 |
| 5 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -6.74639211423111 | 5.38753324314135e-05 |
| 6 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | -2.07972441415982 | 0.0104916992278653 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.0991512724723 | 0.00341464681890962 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.13210631259043 | 0.00979351927192939 |