RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC9268619

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr2

Start:

28572908

End:

28574963

Strand:

+

Ref_name:

LOC9268619

Sequence
(XR_001542986.2):

UAGUCGGUAGCAGAGGAGAGCCUCAGAGGCGCACCGCGCAGGCGCGCUCGCCGCUCCGCUCCAAUCCUCCCCCAAAUCGCGUCGCGUCGCCGCUUCUGUCUCGUCUCCGCCACUCCCUCCGAUCUCCCCGCUCCUCGUCUCCUCCUCCUCUCGCUCUGCGGCGCAGCGGCAGGUGCCAGCGCCAUCGCCCAUCGGCCGCCCGGGCCCGACGCGGCAACACCCCGGCCGGCGGCGGCCACGAUUCUACCCCCGCCGCCCCUCAUGGCGGCGACGGCGCGUCGGCGUCGGGUCCCUCUCCCUCCUGCUCGACGAGUCGACGGCUCUGCUCCAGCCUCCCUCUAGUGCCCUACUACCCUGCGCCCCUGCCCCUUGCCCCCGGCCGACCGGCCCCUGCUAGUGCAUCGGCAUAGACGCCAAGUAGGACCACCCAACGAUUCGUUCCUGGAGCUGCCACUGAGGCCGGCAGCAGAGAGGGCGGAGCGGCGAUGGGCGGGCGGCAGGCGAGCGCGGCGGCGGGUUUGCGCGGCAGGCAAGCACGGCUUGCGGGCGGAGCAGCGGCGGCAUGGAGCGGCGCUGGGAUGCGGGCAGAGCGGUGAUGGGCGGCGGCGGGCGAGCAGACGAGCACGGCAGGCGGAGGAGGGGGCCGCUACGGCGGAGGUGGCCGAAGGAGGAGCGUGGCGGUGGUGGGCGAGCUCCGCCAGCCUACUCAGCCCACCACGUUGCCGAAGAAAGGGAGGAGCAUGGCGACAACGGUGGUGAGGCAGACGAACUCCGAGCGCGAAGGGCCCCACGCGGAGCUCCUUGGCGAUGAACGUGCUGUCCGGCCACCGGCAGGACGCCUAGCGCUCGACGAAGACGAAGAUUGGUUGGACGAACACCUGGUAGGCGCCGACGAGGUGCACGACGAUGGUGAACCCGAACCCCAUGAGGAGGUUGUCCGGCAACGCGUAGCCCAUGCACCCACAUAGCAUGUAGAACACCGUCGUCGUCACCACGCUCAGCCUCGUCGCGCUCUUCAUCACCUUCGCCUCCAACGGUGGCGGCGCCUUGAUCGUGUCCUAAACAACAAAACAGAGCAAGCAGCGGUGAGCAAACAAGGUUUGGUUAGAGAAAAAAAAACAGAGCAAAUUAACUUUGUAGCUAAUGGUGUUAGUCUCACUCACUUGUAUCUCGAUGAGGAUGUUGGAGAAGGAGUAGGCGAAGGUGAUGUCACUGAAUGCCUGCAGGCUGUGCCACACCUUCUGCGUUGAGCUGACACCGACGCCGAUGAUGAUGUCGGUGAGGCUGCCAUGGAUCCCGCCAUUGGCUACAAAUUCAGAGCUCAUCACGGUAAGCAAAGACAAAUUAAAGAACCAGAAUAUCUGUAUGUGACAGAAGGAAGAAUUAAUGGACGUUACUCGAGCUGCGGCACGGGUCGCCAUGGCCGUUGUGGUGUAAGGGUUACUCGCGCUCGUCUGCUCGCCCGCCGUCGUGCUCGUCCGCUCUAACCGCCACCGUGCUCGGCCGCUCGCCCGCCGUCGCUCGGCUGCCGUGCUCGCACGCCUCCGCGCUCGCCCGCUGCCCGCCCAUCGCUGAGAUAAAGAGAAGAGAAGGAAAAGAAAAGAAAAGAAAGAAAAUGUGCAACUGACAUGUGGACCCCACGUACUUUUUUAUUUUUUUGCUGAAUAGGAUGCCACGUCAGCGAAACCACCCACAUAUACUGCCAUGGGACCUCCUUUAAACGAUUUGUAUGAGUUGAGGAUACACAUUUCUGGUUUUAUGGUUAAGGGACUUUAAAAAAUCUCGCUGUUAA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

18

LEP:

3.66%

ME_num:

367

MEP:

74.59%

HE_num:

106

HEP:

21.54%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot_apical_meristem

Tau :

0.82

Avg Expression:

15.58

Tip: OSA-LNC9268619 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN1.091298581669280.0212530939048783
2IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA)1.478431676445670.0118895395575763