Chr:
Chr6
Start:
24197088
End:
24199642
Strand:
+
Ref_name:
LOC9268616
Sequence
(XR_001546991.2):
GAUCGAGAAAUUAAAACCUGUCUUGCGGCGCCCAUUUUAAUUUCGUUUAUUCCCUGUUAAUUUUUCCUCAAUUGCUGUAGGAUUCCCGAUAGGUAGCCACCUAGCCCAAAAUUCGCUCGAAAUCCUGUGGAUCCCCGGUUCAUUUGGCGCCGGGAUCUGACAGCGUGGCAUGUGGCAGCCGCGGCCAAGCUCAGUGCCGGUUGCCUGGUUCCCCAUAGGCGCGAUCGACGGAGGCCGAGAGAUGCAGCAGCAGCAGCAGAUGCGCAACCUUGUCCUUCCACAGGUGUACCUUCAUCUAUAGAACAUGGAGAAAAUUUUCACUGGUUAUCAGUAUUUUUGCCUGGCAACCCAUGCCUCUCCUGCCUCCCCUCAAGGAAAAUGAGAAAAAAACAGCACAUGCAUAGAGAAGCUGACAAGAGUGAUAGUGAGGGAUAGAGAUCACACAUGUCUGGGACGCCAUAUCAAAAGCUGCAGCCGUCAGGUUCAAUAACUCCAGUUUAGCCAUCUUGAUUUCUUUUAGCACAUCAAUAAGAUUACCCAGGAGCAAACUUGUUUCCUGCAGAAAUAGAUGAACCUCAUUAGCCUGCUAAACAUAUAUUUCUAAUAUAGAACCUGUAACACAUGACAUCAUCUACAGUAAAAGCAUAGUUGUUUCUAUUCUCAAAUAGAUGCAACUUUUCGGUAUAUUAUUAUUAGGAUUAUUUACUGUGCAGAAUGUAAGAAGUUCAGAAUGUGAUUUCGGUAAUUAUCAUUUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
73.58%
ME_num:
MEP:
24.8%
HE_num:
HEP:
1.42%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.89
Avg Expression:
3.75
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.55720013713826 | 0.00638433515569667 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.75989019849727 | 0.00120355846256011 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.09109960410219 | 0.00155042085375338 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -3.35355438163932 | 0.000245391472134228 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.26644569736714 | 0.00216937415695652 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -3.08101704245781 | 0.000112083433965874 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | -1.23340411819903 | 0.0435939731449366 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.51320960849338 | 0.0107412695313975 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.47295849622875 | 2.34773423332637e-05 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -2.33166503803762 | 0.000209219752168421 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.17831322774559 | 0.000237878512762332 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.12286712964774 | 0.000483571685341223 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.28708898822714 | 3.48358813508451e-06 |