Chr:
Chr8
Start:
18527566
End:
18530587
Strand:
-
Ref_name:
LOC9268614
Sequence
(XR_001548033.2):
UAGAAAGCUAAAAAGCAAGAAAAGACACCACAAGACCAGGACCAACCAGCCAAGACUUAUUCCUACACAUGAACCAUUCUCCAGUCCUCCCUCCCUAGGUGUGCUCCAAAUCCAAGACUCCCUGCCAUGGUCCUUUGCCCAGAUCCAGGCUGCCACGUCUUCGAUUGCUCACAUCUGCACUUGAUCGUGGUCUUCGGCGACAGCCUGCAAGGGAGAGGAGACCUGACGGUGGGGAUUGAAGCGGUGCGAUGGAGAUCCGGCGGGAGGGAAGACCAGUGCUUGCUCCCGCCGAGCGUGUUCUCGACUGCGCCUCCUCCUUCCCACCUCAAAGAAAUCAGUUCGAUUUAAUCUACCACAGGUAAUGCUUCACUUGCAAUGUUACCUGGCAAAUACAACUUCUUAGUGCUUUUGAAGGUAGCUGCUGCGGUGAGAGAGUCUGGUACGUCUUGGAUCUUCUUGGUUUGGACUUGACCAAAAGCAAUGAAUAGUCAGGCAGAUAUUCCUCUAGACGAAAAAUGUCUGCAUGCUUUGCUUUGUUGAAUAGAUAAAGUGGGUCAAAACGGGAGUCCUAAUGUGCAAGCAGUUGGUCAAGAAGCUGAGGAUAUCCCAUUCCAAAAAAAAUAUGUGCCUUCUUUGCAUGUAAUCAAGCCAUGCAGAUUUAAUCUUUGAUCAAGCCAAGAUCAGUUUUGUCACUAUCUGAAUUUGCCGUAGGAAAAUGGCAGAUUUCCUUCUCACAGGCAUAAUUGCAGACUGUCAAUAACUCAAUACUUUGAAAGGGUAGCUUUGCCCAGAGUUAAUUGUGACAACAUGAGCAACGGUGAAGAAGAAGAAAGAGCAUGAAUUCCAUGACUAAAUAUUGUGGUCUAUUUUGUAAAUCCAUUGCCGGGGUAUCUGUUCAUGUAAUCCACAAAAAGACUUGGCCCGUAAAUCCACCGCAGUUAACAUUCUUGGCCCCCACAAGAAUAUGGGUAUAUUUCACAAUUCAAAUUGAAGGCUCCCAUUAAAUAAUUAUAGGUGUAUUUGGUGGAUGACUCGAGUUCAGUUUCGAUGGAAUGUACACUUUCUCUUCAAAUUCAGCUUGAUUUUUUUCUCAGUUUAUAAGUUAGACAUGUGCAGUGUAUUGUGCUUGGUUGUAUGAAAUGGAGUACUGAUCUUUUUUUUAACUAUUAAUUUGCAUGGAAAUUGAAAUGAAUCCUGAUUUCAUCUUUAUUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
18.29%
ME_num:
MEP:
44.92%
HE_num:
HEP:
36.59%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.77
Avg Expression:
23.04
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 4.25478109349852 | 1.1501310827516e-37 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 3.94390810685116 | 1.02482297379676e-33 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 5.16119433807038 | 4.6987514579348e-67 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 3.48220615864479 | 1.1315468498577e-15 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 4.96194938814678 | 2.40897294118432e-57 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 4.04292985378875 | 1.06471143344829e-31 |
| 7 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | 1.24618219742627 | 0.00464609863502414 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 3.79932160848215 | 1.55313313194306e-31 |
| 9 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.04248248949168 | 1.10509379734915e-07 |
| 10 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | -1.5608579458034 | 0.0111553414491933 |
| 11 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 9h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 9h50 min" | -1.39119068174101 | 0.00389091221641812 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 1.45498816622986 | 0.00313486453697621 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.39887520429942 | 0.0127241825971789 |
| 14 | 9311 // leaf // control--/--9311 // leaf // salt | -1.08759593378382 | 0.000220110489982887 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 4.80520038170588 | 6.87184250207605e-60 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 4.58736208472289 | 1.80653013766947e-53 |
| 17 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 1.71856405065135 | 0.00914754530863226 |
| 18 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 1.40095643341422 | 5.18646960739927e-09 |
| 19 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | -1.47764129572631 | 0.000916372985662172 |
| 20 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 3.90720263232251 | 1.47088203222773e-29 |
| 21 | 9L136 // leaf // control--/--9L136 // leaf // salt | -1.09236641974327 | 0.000314529069361439 |
| 22 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 4.28397287568265 | 1.57139056087934e-44 |