Chr:
Chr5
Start:
17793979
End:
17795212
Strand:
-
Ref_name:
LOC9268611
Sequence
(XR_001545870.2):
CAUUUCCCUCCUUUCUCACAUAGGUACACAUCUUUCUGAAUCACCAGAUCCAAAUCAAAGACAACCAGCCGCACAGGAUAGGAGCGAUGAUGAGUGAAGCCUCGAUGCUAUCCUCCCCGGCGGCAACCUACUCUGGCCUCUGGCUGUCCUCGCCCUCGUCGGUAGCUGAGAAGGCGCGGAAGGAGAGGAACUCUUUUGGUAAGGAGGAUGUUGCCGAUGUCGCCGUUGCGCCGAACACGGAUGCAGAUCUGAGGGAGCCGGAUGUGGUGAAGCUUAGAGGGAGCACGCUGCCGAAGGUCCGAGGGAGCUAGCCCCCGACGCAGUGGAGUUGGCGGUCAUGCGUUGAGGAUAUUGACUCGUAGCUCUAGGCUCUGAAGACUACCAAGCUGAGAGGAGAGCAACAUGCAACAGACAGUAAUCCUGUGGGUCUAGGGUUCAGCACUUCAAAACUGACGACCAUUGUGAGAAUACAUAGGAGGUGCUAACUAAGAUGAUGAUUGAAGGUGACAAUCUAGAGAAGGUGCUGCAGGAAUUGGAGGAGAUGAAGAACUUCAUCAAGACAAUGCAUAGCACUUAUCAUGCUAUUAGGAUUUAAAAAGAAAAUUCAUAUAAGAGUUAGUUUGUAAUCAAUUUGUCUAUAUACUGAAAUGACAAUAUUACAAGCAAACACAAUGUGUAAAAUGCCUCUGCUUCUUCCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
24.8%
ME_num:
MEP:
13.01%
HE_num:
HEP:
61.99%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.60
Avg Expression:
16.29
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.05649434777263 | 1.44996734021154e-09 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.90494241232073 | 1.11517317024513e-08 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.46403322981919 | 8.80660140489483e-16 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.29131156091731 | 7.34709127510734e-11 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.1158115125798 | 0.00866124654929308 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.55527928634628 | 5.87420444841789e-06 |
| 7 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -1.45951830000977 | 0.013698202569663 |
| 8 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.18376600021657 | 0.00528366550151015 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.23902662680445 | 0.000104767689638116 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP2286 | -1.10310860521001 | 0.00285470279516661 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.2680261112393 | 0.000132916215951382 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.52481502537568 | 1.17144289817749e-05 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.79471910022671 | 2.0469950400286e-08 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -1.20128621128864 | 6.87288706117604e-05 |
| 15 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.18961389874812 | 4.42781590163276e-08 |
| 16 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.10115643591102 | 0.000108862414579406 |
| 17 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | -1.25103207670626 | 0.000120119674656896 |
| 18 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.27531121909986 | 0.0288293300457233 |
| 19 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.15528626201144 | 0.000281610737024889 |
| 20 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.27541668046921 | 0.0292109517493357 |
| 21 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.27548560909772 | 0.028887628492482 |
| 22 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.80590048397657 | 0.000220350415986236 |
| 23 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | -1.12488657685959 | 0.00117057433426343 |
| 24 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.36257782379059 | 6.28756903400801e-10 |
| 25 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | -1.23208484056019 | 0.009826803775559 |
| 26 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.580933539939 | 3.38958887218892e-05 |
| 27 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.37049225540932 | 6.65305227705099e-05 |