Chr:
Chr6
Start:
13280767
End:
13284825
Strand:
+
Ref_name:
LOC9268525
Sequence
(XR_001546359.2):
UACGUGCUAAAUCAUCCGAAUUAAUCUAUACCGUCCAUCCACGCGCAAGAUUUCUCCACAGCACAAUUUCACCGCCAAGGAUUUCACGCGCGAAGACUUCGCUCCUCCUCCUCCACCCGCGGCUGCGAAAACAUCGCUUCUCCUCUCUCGCUCAUCCUCCUCCCCGCGUGUAUUGAAGUUGCAUCCUCACCGGAGCUCCUCCCUGCUGCAGCCGCUUCGCCGCAUCCUGCUUCUUCCCCACCGCCGCGGCCAUUCUCCUCGCUCGCUCCUCCUUCUCCCCACGUGUACUGAAGCCGCAUCCUCGCCGGAGCAGCCGCUGCUGCCGCUGCCGGAUACUGCUUCUUCCUCACCGCCACGGCCGGAUCCGACCUCGGCCCCUUCUGCCGUCACCGACACCGCCGUGCACUCCGCCGCUGGCCGGCACCGAGGUCGGCCCUCUUCCCCAUUUGCCACUUCAUCAUCAUCAGAUCGCCAAUGUUGACCCUAUUGUUGAAAGCCUAUAGUACGAGUAAGUCCCUCAAAUCCUGUGUCUUUUCUUAAUCUUCUCCGUACGUGUGGAAAUUUUGAUAUCUAUGUCUGAUGAUCUUCGUUCUUAAGCCUUGGCUAUGUUGGCUAAAUAUUCAAGAAACCUAGAUAGUGACUGCUGAUAGAUUCAUGUUAUGUCCUGUCCGAUGCUGAAUCAUGAGGGAUUCUCCAAGAGGACAGGAAGCUGUCCUACAGAACCAGGCAGUCAAGUUGUAGAGAUGGUGAAAAGUAUGGAGAAGCUACAGUCAAGUUGCUUGCUGCUACAUUAUGACUAACAGGAUCAAUGGGUGCUUGCUGAUAAAAGAAUGCAUAUAAAUAACAAAUGGUCCAGCCUCCUACAACUGUCACUGUACAGCAUCAAAAAAGGAGAUUAUGAUAUCUGAAAACUUCAAUCGCAAAGUUUGAAAAAUAGAGUGCAUCAAGUUUGCCAUGGAGAUGGCAACUACCAACCCAUGGUCAUGCGGACAUCAAGAAGCGGACAACAAGAAACAUCAUAGGAGCACCUCACCAUCACAUGGCUAUGAGCAAGAGGGGUCUGCAAGAGUAAUCCACUGAACUUUGUUGAACUUGUAAUUUUCAUCUGCAUGCUCUGGUUCUCUAAUUGCUUUGAAUUACUUAUCAUCCUUCAAUAAACCAGCUGUUGUGAAUUCCCAAAACAAAGUUGGAUGCGCUAGACACCAUCUGAAGUUGGUCAAUGGCAACUCGAGAAAUUGUAUAUAUUUGGAACAUUACCUUCCUCAUUAGCUUUUUAUUUCUUCAAUUUCUUCUAGCAAAUACAGGUAUUAUGAACAACAACUUUUUCAUGAUUCUAACCUCCAAUAAUCUGAAGUUCCCAGUUUGAUUAUAUAAUCUAGGAACCAAAUCAUGAAGCUGGCGACAUUGGUAAGAGGUAAUGGUCUAGAUUAAUCUAUAUUGAGCUACGGUUUGUAUUUUGUUGUUGGGGUAAAUUAUGAUGUCCUUUUAUAAGAGAAAAGUUUAGUUGGUCAAUGGCAGGUUCAUCUCAGCAGUAAGCCAAUAAACAUACCGAUGAACCUGAAAAAAUUCCAUAUAAAAAACAUUGCAGAGCAAUUUUUGGAAUGUUUCACGUCCAAUCUGUAUUCCCCCUCUAUUCUUCUCAUAAAUUAUCUUAUGAUGAGACAUUGGCCUUUUUAUUUAAGAUCAAAUUUAUGAGACUAUUCAAUUGUGGCCUUAUUUUUGCCAUAUAUAUAGGACAGCCAUACGGGGCACCAUGGUGUGUGCGUGUGAUGGUGAUUGUUUUUCUCCAGCUGCAUUAUGCAUCUCUUUUCAAAUCUUAUGAUAGGUGCUUGUGAUGCCAUCCAGCAAAACCACUGGUUAUUUUGCUGGUAUACUGAUAUUAGGCCCAUAAAUGAUUUUUUUUUGCUUUUUUACAUUCUUUGGUGAUGAAGUUCAUAGUUCUUUGUUCACUGUAUUGAAGCUGCAAUCUAUGACAUUAGAAAAAAGGUAUGGUGAUUGUUUCUAUUUUUCAGUAUGUGAUUUUUCCAAUGUUUUUCAAUCUUUCCUAUUUUUCAAUUUGCCUAUUUUUUACACAUCUAUACUCCUUUUGCAUUAUGCAUCUCUCAAUAGAUGAGAGCCUUAUUUUAUUUUCCUUGCAAGAAAUGCUGCUGAUCAAUUUAAUUUUGUGUUAUGCUACUGUAAGAUGGCUUGAUAGGAGUUUUGCAAUACAUACUGCACUACUGUAGGCACUGGCACAGUUUGAGAGCACAACAUAUAGAAUUUCCUUAUUUGUUUUGUAGUUUACAAUGUGAUGUUUAUAUCACAGGCUUGGUGUUUACUGGGUACUUGAUGCUGGAAAACAUUUAUGACUUUAUAUAUACUUCCUCAAACAAUUUAAGAUUCUCUUUCUUGAUUUGUUUCUGCAUGUAAUGGUGAAUUUCCUGAUUACUAAUAACUGUCAUAUGGCUUCAUUUAUUUGUCGGAGCUAACUGGGUUUGAUUAUUUGUGAUCACCUUAAGUGUUGCUGCUUAAGCCAAAGGAAGAGGAAAAACUUUUAUAUAAGCAUUUCAUUUCAUACAGGUUCCCUCAUAUUUUCUAGGUACCAUUGCCACUCUAGAAAAGAUUGGAAGGCCUUCUAGGCAUCAUUGAUACUCCUGUCCAAAAGGUGUUUGACGAAUUUGGAAGGCCUUCGUUGUUUGCUGCAGAUAGACCAAACAUGAUUGCUUGAACAAAAAAUAGAUGGUUGUGGGAGAACAUUCAUCUUUACAUUCUUUAGCUUUCCCUAUUUUCUUAGUAUCUUGUAGUACAUGAAAUUGCAAUUCCUUUUACUUACUAGAAAGUAAAUGUCGUGCAUUUGCAACUUUGUUAUACAACGAAUAUAUCAACUGGGGUUUGUGAGCAAUGUUUUGAAAAUUAGAUUAUAUCAUGUAAGGAUUUCAUAUCUUUUUUACCAAGAUUAUCUUAUGAGUUUUUAGCCUGUGUUUUUUAUUUAAAUCUUGAUGUUUUCAUGCAGUCAAUAUUGACAAGAAUGCCACCAUCUUUUUUUUUUUGCCAUGGAUUUCAUUGUUAUGUUGUAAUCUGGUGUGGAAUAUGGGAAUGGCUACUUUGUACAUUAUGAAUAUACAUGUACCUUUGUUGGCUAGAAGGUAGUGUGAUUCACCAGAAAGGAUUUUAUAGUAAUCAUCCAAAUUGUUAUUUUACUAAGGUGUAUGAAAUUCUAUUUUUA
Sequence
(XR_001546361.2):
AAUCCUACGUGCUAAAUCAUCCGAAUUAAUCUAUACCGUCCAUCCACGCGCAAGAUUUCUCCACAGCACAAUUUCACCGCCAAGGAUUUCACGCGCGAAGACUUCGCUCCUCCUCCUCCACCCGCGGCUGCGAAAACAUCGCUUCUCCUCUCUCGCUCAUCCUCCUCCCCGCGUGUAUUGAAGUUGCAUCCUCACCGGAGCUCCUCCCUGCUGCAGCCGCUUCGCCGCAUCCUGCUUCUUCCCCACCGCCGCGGCCAUUCUCCUCGCUCGCUCCUCCUUCUCCCCACGUGUACUGAAGCCGCAUCCUCGCCGGAGCAGCCGCUGCUGCCGCUGCCGGAUACUGCUUCUUCCUCACCGCCACGGCCGGAUCCGACCUCGGCCCCUUCUGCCGUCACCGACACCGCCGUGCACUCCGCCGCUGGCCGGCACCGAGGUCGGCCCUCUUCCCCAUUUGCCACUUCAUCAUCAUCAGAUCGCCAAUGUUGACCCUAUUGUUGAAAGCCUAUAGUACGACCUUGGCUAUGUUGGCUAAAUAUUCAAGAAACCUAGAUAGUGACUGCUGAUAGAUUCAUGUUAUGUCCUGUCCGAUGCUGAAUCAUGAGGGAUUCUCCAAGAGGACAGGAAGCUGUCCUACAGAACCAGGCAGUCAAGUUGUAGAGAUGGUGAAAAGUAUGGAGAAGCUACAGUCAAGUUGCUUGCUGCUACAUUAUGACUAACAGGAUCAAUGGGUGCUUGCUGAUAAAAGAAUGCAUAUAAAUAACAAAUGGUCCAGCCUCCUACAACUGUCACUGUACAGCAUCAAAAAAGGAGAUUAUGAUAUCUGAAAACUUCAAUCGCAAAGUUUGAAAAAUAGAGUGCAUCAAGUUUGCCAUGGAGAUGGCAACUACCAACCCAUGGUCAUGCGGACAUCAAGAAGCGGACAACAAGAAACAUCAUAGGAGCACCUCACCAUCACAUGGCUAUGAGCAAGAGGGGUCUGCAAGAGUAAUCCACUGAACUUUGUUGAACUUGUAAUUUUCAUCUGCAUGCUCUGGUUCUCUAAUUGCUUUGAAUUACUUAUCAUCCUUCAAUAAACCAGCUGUUGUGAAUUCCCAAAACAAAGUUGGAUGCGCUAGACACCAUCUGAAGUUGGUCAAUGGCAACUCGAGAAAUUGUAUAUAUUUGGAACAUUACCUUCCUCAUUAGCUUUUUAUUUCUUCAAUUUCUUCUAGCAAAUACAGGUAUUAUGAACAACAACUUUUUCAUGAUUCUAACCUCCAAUAAUCUGAAGUUCCCAGUUUGAUUAUAUAAUCUAGGAACCAAAUCAUGAAGCUGGCGACAUUGGUAAGAGGUAAUGGUCUAGAUUAAUCUAUAUUGAGCUACGGUUUGUAUUUUGUUGUUGGGGUAAAUUAUGAUGUCCUUUUAUAAGAGAAAAGUUUAGUUGGUCAAUGGCAGGUUCAUCUCAGCAGUAAGCCAAUAAACAUACCGAUGAACCUGAAAAAAUUCCAUAUAAAAAACAUUGCAGAGCAAUUUUUGGAAUGUUUCACGUCCAAUCUGUAUUCCCCCUCUAUUCUUCUCAUAAAUUAUCUUAUGAUGAGACAUUGGCCUUUUUAUUUAAGAUCAAAUUUAUGAGACUAUUCAAUUGUGGCCUUAUUUUUGCCAUAUAUAUAGGACAGCCAUACGGGGCACCAUGGUGUGUGCGUGUGAUGGUGAUUGUUUUUCUCCAGCUGCAUUAUGCAUCUCUUUUCAAAUCUUAUGAUAGGUGCUUGUGAUGCCAUCCAGCAAAACCACUGGUUAUUUUGCUGGUAUACUGAUAUUAGGCCCAUAAAUGAUUUUUUUUUGCUUUUUUACAUUCUUUGGUGAUGAAGUUCAUAGUUCUUUGUUCACUGUAUUGAAGCUGCAAUCUAUGACAUUAGAAAAAAGGUAUGGUGAUUGUUUCUAUUUUUCAGUAUGUGAUUUUUCCAAUGUUUUUCAAUCUUUCCUAUUUUUCAAUUUGCCUAUUUUUUACACAUCUAUACUCCUUUUGCAUUAUGCAUCUCUCAAUAGAUGAGAGCCUUAUUUUAUUUUCCUUGCAAGAAAUGCUGCUGAUCAAUUUAAUUUUGUGUUAUGCUACUGUAAGAUGGCUUGAUAGGAGUUUUGCAAUACAUACUGCACUACUGUAGGCACUGGCACAGUUUGAGAGCACAACAUAUAGAAUUUCCUUAUUUGUUUUGUAGUUUACAAUGUGAUGUUUAUAUCACAGGCUUGGUGUUUACUGGGUACUUGAUGCUGGAAAACAUUUAUGACUUUAUAUAUACUUCCUCAAACAAUUUAAGAUUCUCUUUCUUGAUUUGUUUCUGCAUGUAAUGGUGAAUUUCCUGAUUACUAAUAACUGUCAUAUGGCUUCAUUUAUUUGUCGGAGCUAACUGGGUUUGAUUAUUUGUGAUCACCUUAAGUGUUGCUGCUUAAGCCAAAGGAAGAGGAAAAACUUUUAUAUAAGCAUUUCAUUUCAUACAGGUUCCCUCAUAUUUUCUAGGUACCAUUGCCACUCUAGAAAAGAUUGGAAGGCCUUCUAGGCAUCAUUGAUACUCCUGUCCAAAAGGUGUUUGACGAAUUUGGAAGGCCUUCGUUGUUUGCUGCAGAUAGACCAAACAUGAUUGCUUGAACAAAAAAUAGAUGGUUGUGGGAGAACAUUCAUCUUUACAUUCUUUAGCUUUCCCUAUUUUCUUAGUAUCUUGUAGUACAUGAAAUUGCAAUUCCUUUUACUUACUAGAAAGUAAAUGUCGUGCAUUUGCAACUUUGUUAUACAACGAAUAUAUCAACUGGGGUUUGUGAGCAAUGUUUUGAAAAUUAGAUUAUAUCAUGUAAGGAUUUCAUAUCUUUUUUACCAAGAUUAUCUUAUGAGUUUUUAGCCUGUGUUUUUUAUUUAAAUCUUGAUGUUUUCAUGCAGUCAAUAUUGACAAGAAUGCCACCAUCUUUUUUUUUUUGCCAUGGAUUUCAUUGUUAUGUUGUAAUCUGGUGUGGAAUAUGGGAAUGGCUACUUUGUACAUUAUGAAUAUACAUGUACCUUUGUUGGCUAGAAGGUAGUGUGAUUCACCAGAAAGGAUUUUAUAGUAAUCAUCCAAAUUGUUAUUUUACUAAGGUGUAUGAAAUUCUAUUUUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
4.07%
ME_num:
MEP:
51.83%
HE_num:
HEP:
43.9%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.63
Avg Expression:
10.93
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.41752696793203 | 0.0228999604691304 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.7928730822372 | 0.000970301481309677 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 4.1250108698194 | 6.07202481842688e-21 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 3.61852860328198 | 3.00593116565778e-16 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 2.91544505982513 | 2.13820277543824e-11 |
| 6 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.62483445166513 | 3.78807340821479e-07 |
| 7 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -1.14743754830482 | 0.024708224301738 |
| 8 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | -1.46599072142215 | 5.44371947298165e-08 |
| 9 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | -1.05184117693325 | 0.00150178811218367 |
| 10 | Baldo // root // control--/--Baldo // root // 100 mM NaCl | 1.01060508559665 | 0.00582749268089767 |
| 11 | Baldo // leaf // control--/--Baldo // leaf // 100 mM NaCl | 1.17524126462873 | 0.00445454578990853 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 2.92335607155326 | 2.60876444630257e-11 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.63550288842269 | 0.00152588089027639 |
| 14 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.88279523026744 | 2.29359212001193e-06 |
| 15 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.88286429761382 | 2.44674642438682e-06 |
| 16 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.88298380597712 | 2.3110236632791e-06 |
| 17 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | -1.25447163960613 | 0.00401130720362486 |
| 18 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.19085536313712 | 0.000368213340016677 |
| 19 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 3.07015865528619 | 3.53762248572187e-10 |
| 20 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 2.30847902409104 | 2.16247646079059e-07 |