Chr:
Chr4
Start:
3273521
End:
3275535
Strand:
+
Ref_name:
LOC9268509
Sequence
(XR_001544899.2):
CCCUCCUCUCUCUCUCUCUAUCUCUCCACCCUCAGCCGCCACACUUCUCCCAUCCAUUCCCCUCUCCUCUCCUCUCCUCUCCGGCGGCGGGUAUCGGCGAUGAAAGCGUGCGGCGGCGUCCUCCUCCUCCAUCGCCGCUCGUGGUGCCGGCUUACUCCUCCCUCACCGCUUACUGCGUCGCCUCCGUCUCCGCCGGCGCCAGGCUCGGGAGUGGUGGAUCUGCGGCCGACAGCGCUCCCGGGCCUAGGGCGGCUAGAUCGCGCGGCGGCAGUCCCCGGGCGGCUCGACGACGGAGCUCGCUGCCACGCCGUUUGUGCCGGCGGGCUCCUGCUUCGGGGUUUCUGGAGGCGCGUGGGGGUCCGUCCGCAGGUGUAGUCUGCAUACUGGCUCAAGUUCUGGCGGAACAUGAUGCGCGUCACUCUCAUCUACGAGGCGCACGCCGCGCGGAUGCUGGACCGCGGGACCCCAUCAACGCCAACCUCUACGUUAAGGAGCUCAUGCGCAAGAAGCUUCGGGAACUCAGGCACCGUUGCCAGGAGGGUUCGCUCGGGGACAACGUCUUCUGCGUGCGAGCCGACCUGCUCAGGAAUCUCGGCAACACGUGCAACUCCAAGAUCCACAACCGGUGGGGGAGGGGGGGCUGCAGGAGGAAUGGAUACAUGCAUCAGUCAAGGAAGGAGGAGUAUGAACAAGAGAGCAAGACAUGCAGAUAGGAAGACAUCAUUCGGCGAACCAACCAAACUGUGUGAGUAGUUAGAUGAUUUUUAAGCAUGCAUAUGUAUUCUAGACAAGUUGUUAGGUCUAAUGGUGCUGAGCAUCUGUUAGGUUAGGUGAUGGAGUGCUGAUGUAUUUGAUAACUGUAGGCAAGUAAGUUGCUUUAAUUUGAAAUAUCGAGGGAGUAUAUGCUAUGGUCUAUCGGAUAAUUUAUUGAUGUCUAAAUUAUCGUUUCUUAGGCCAACUGAUACUAUGAUAAGGAAAAAAAGAAGCAAAAACACAUUGUUCAUGAGUAAUUUUGUAAGUAGGAGUUUUGUUUUGGUGGUGCGCUUUCGAUAUAUCAUAUUAGGUUACUACCGGGGCUUUGAAUUUCAUGUUGUGAUUGUUCCUUCCUUACUCUUUACUUACUUCCCCUAUCAUAAAAAGAACCAAAUCCAUGUCCAGAUUCAAACUCAUGAUUGGGAUUUUUUUUUGGACAAAGAGAGUACGUGUCAAUGGGUGAUGGGAUGGUUAGCCCAUAACCUUGAGGUUGUGUGUAAAACCAUUUGUAAAAGAAGGUGAAAAGCCUCCUUAGGGAUGUUGCCGUCGGGCGCGUUGCCAUGCGGCAGAUGAACGGGCUGAAGCAGCAAUACAUAUGAACAUAAGGUGACACUGAACUUGCGACCAUUGUGCUUGUGGGAUGUUAUUUUGUUGUUGUUGUUGUGCUUCUGGUCGUUGUGCUGUUGCUGUUGUGCUUUUGGCCAUUGCGCUGCUGCUGCUGUGAUGCUAUUGCAGAUGUGCUGCUGUUGCUCUCGCUGUAGCAGGAAGAUGAAAUUUGAGACUUUGGAUAUGUAUUGAAUUGGUGGAUGGAUGUAAUGAUAUUGCAUUUUAAGACUUGUGGAAUGUGAAAUGCAUGUGAUAUUGCAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
16.67%
ME_num:
MEP:
20.12%
HE_num:
HEP:
63.01%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.73
Avg Expression:
51.05
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -9.2570686796044 | 9.67654458721946e-16 |
| 2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.13923415149675 | 1.88518068047548e-06 |
| 3 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -7.62665589566671 | 7.39908928079621e-07 |
| 4 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | -1.14191523503574 | 2.22505242120573e-07 |
| 5 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.06671278963709 | 0.000210790510550062 |
| 6 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.38441270055194 | 6.34632836329775e-09 |