Chr:
Chr7
Start:
23400807
End:
23401982
Strand:
-
Ref_name:
LOC9268426
Sequence
(XR_001547333.2):
GACUGCAGAUUGCAGAAGCACAGAAGAAGAUACUACUACUACAUAGUAGUACAUAGCACUAGUAUCUUCAGAGAGCAGGAAGAACAUAGUAGAUAGAGACAUAGAGUGCGCCAUGUAUAUCUGCAGUCUGCAGAGAUGAGGGAGGAUGUGCGUUCUUGUGGGGGGUUUGGGCCCUGUGAUCAGGAGAGAUGACACCGACAUCGCCGGAAUUCGUUCUUGGUCUUGUGCCAUGAUGAAUUGAUGGUCCGUUUGAUGCAGGUGUCAUCUCCCCUGAACAUAGGACUGACUGACCCUGAAUGGAUGUGUACCUCGAUGAUUCUUCGGUUUCUUCUGUUCUGUUCUGUUCUUGAUUUGCUUUUACAAGGUAAUGCCUGAUGCUAGUAUGCAAAUGUCAGCUUGUCUCCUCGAUUGGUUUCUCUUUCCAUGAUUAUCUGCAGGUGAUAAGAGUUGAUUAUCCAAGCUCUGACAUAGACGUGUGAGAAGGACAUAGGUUGCGGAGUCAACCACAAGGUUUGCCAUCCACUCUUGCCAGGGCAGACAGUAAUUUAGGCGUCACUUAGCUGUAAAAACGGGAAUACCAUUAACUACUGCCCAGAAAAACUCGGUGUCUUCAUUGACAACACAUGGUGCAUUCUUUGUUUGCUGCGUGGUCAAAUUUUUUGUGUUACCUCAUACGGUUUAUCCCAUCUUAGGGAAGAACAGAAUCGGAGAAUCCGCAGGCGAGACCGCACCAACCCGAGCGCUGCUUCGGUUUGGGCCGAAACGAUUGAGCGGCCACCGUUCAGCUGCGGCCUGCGGGCCUUCGGGCCACACGGCGAGGCCGAGGCCCAGCACACGCGUUCUGAAGACUUCUCACGGGCUGUGGCCUGUGGAGGAAGCAAACUGAAUGCCGCACCGCACUUUGUACUGUUAGCGCUGAUUAAUGGUGUGUCAUGGAUAAGUGAAUAUUUUGUAAAAAGAGAUUUUUCUGCGAAUUCAAAAAUCGUACUGUACCACGUUAUGUUUGUUAAGUGCAGAGUGCACCUAAAAUCUUUAAAACAUAUGGUAGAACAACAUGAAUGAAACUACUGAAUUCAGUGGAAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
21.54%
ME_num:
MEP:
51.42%
HE_num:
HEP:
26.83%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pistil
Tau :
0.93
Avg Expression:
69.51
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 3.5h | -1.24272069948355 | 0.0272847288948908 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 4.54810198922435 | 7.10067640091037e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 7.86511215419144 | 2.01099344535792e-14 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 4.61338825251214 | 0.000108231028947587 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 6.73108434882171 | 8.8291382730655e-11 |
| 6 | Azucena // root // control--/--Azucena // root // Al | -1.23013109705637 | 0.0414513211664741 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 4.90601930799344 | 1.12710885791772e-05 |
| 8 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 2.13217972107805 | 0.0116579017110029 |
| 9 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 1.52238495933808 | 0.00633328910781137 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 3.39342756791573 | 0.0216468345270566 |
| 11 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 1.92915153914985 | 0.00248281338209515 |
| 12 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | 1.8122250467458 | 1.29870092816367e-26 |
| 13 | 9311 // leaf // control--/--9311 // leaf // salt | -4.15406189826444 | 1.04765939833404e-45 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 7.89645738773699 | 2.47884907951184e-15 |
| 15 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.7736325632843 | 2.44599373745062e-07 |
| 16 | Nipponbare // leaf // Drought;Long_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.75374724609674 | 0.0173362218858462 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 5.4159538981606 | 1.03517304689685e-06 |
| 18 | 9L136 // leaf // control--/--9L136 // leaf // salt | -2.801374735194 | 7.27151277560142e-18 |
| 19 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.42912469041911 | 0.00184959867281988 |
| 20 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 5.22081433716487 | 8.91666090879298e-07 |