Chr:
Chr4
Start:
11638319
End:
11642406
Strand:
+
Ref_name:
LOC9268386
Sequence
(XR_001545148.2):
GCCGAACCGAAGCUUCACCUCACCCAGCUGCGUCGCCACUCUUCACCCACCAUCCCAGUGCCGAUCCAUCCGAGGGAGGAAGCUCCAACUUUCCCUCUCCACCUCUCUUUCAUCGUCGGCCGCCGAAAAGGGGCACGCCGCCGAUCGCCAACGACGACGGGAACGCGACCUCGUCUACGGAGCUCUGGAGCGCGCUCCAAGCGCCGCCGCAGCCGACAUCGUCGCCGUUCCGACCGCUGUAGACCGAUCCAAGCCGAGCCGUCACGCCAACGCCUUCUCCUUGAAGUCCUCCUCAAAACCCCUCAAUAAUCCCAGGCAACGGCGCAGCAAGUGCGGAGAUCGGCCACCGUCUUCUUCACCUCCGGUUGCCAUCGCCAUUGUCGUUUCCGCCUCCUCCGCUCGUCGUCCCGUUCGAGCCGUCGCCGUUCACCCGCAGAAGGACGCCGUCGCCGGGAGGAUGCGCGAGCCGUUGCUGUCACCAAGACCCCGGAAAACAUCAACCUAACCCGCGAUGAUUGCUUAAACGGUGAAGAAGUGAUUUAGGUGCUGACAUUUUCCUGAUUCAAGGCAAGUCCCACCUCCCUCUCUUUGAUCACUUUGAACCUAUGUUUUGGAGGUUAUUGAAAAUGUUUGCAAAUCCUGCAUGUCGAUUGUAUACUAACAAAUUAAAAUGGUGUUAAACUUGUUAGACAAAUUCCUAUUAUUUGCAUUAUCACCUUAACCCCACAUAUAUCCAUAUCCAUCAUUCCUAACCUUAGGAACAAUAUGACUAUACCACUUUUUAUAUGAGUUUUGGUGACACUAGGUUACUAUAAAGCUUAGCCAUGCUUAGAAUGGUCUUCCUUGUCAUUAUGGGCUCAUUACAAACAUGAAAAUUGAUUUAUAAUUAAUCUGGGCAGAACUUUAAUACUUGUGAUUUUGAUAAAUAAAAUGGUGGAAAACAUGGAUUUUAGGUUUAGGCCUCAAGUGGUGCACAUAUGGUGAUUAGUUGUGUACCGAUAGGGGGAGAGUGUGCCCAAACCGACCUAAGGACUUC
Sequence
(XR_001545149.2):
GCCGAACCGAAGCUUCACCUCACCCAGCUGCGUCGCCACUCUUCACCCACCAUCCCAGUGCCGAUCCAUCCGAGGGAGGAAGCUCCAACUUUCCCUCUCCACCUCUCUUUCAUCGUCGGCCGCCGAAAAGGGGCACGCCGCCGAUCGCCAACGACGACGGGAACGCGACCUCGUCUACGGAGCUCUGGAGCGCGCUCCAAGCGCCGCCGCAGCCGACAUCGUCGCCGUUCCGACCGCUGUAGACCGAUCCAAGCCGAGCCGUCACGCCAACGCCUUCUCCUUGAAGUCCUCCUCAAAACCCCUCAAUAAUCCCAGGCAACGGCGCAGCAAGUGCGGAGAUCGGCCACCGUCUUCUUCACCUCCGGUUGCCAUCGCCAUUGUCGUUUCCGCCUCCUCCGCAGCUCGUCGUCCCGUUCGAGCCGUCGCCGUUCACCCGCAGAAGGACGCCGUCGCCGGGAGGAUGCGCGAGCCGUUGCUGUCACCAAGACCCCGGAAAACAUCAACCUAACCCGCGAUGAUUGCUUAAACGGUGAAGAAGUGAUUUAGGUGCUGACAUUUUCCUGAUUCAAGGCAAGUCCCACCUCCCUCUCUUUGAUCACUUUGAACCUAUGUUUUGGAGGUUAUUGAAAAUGUUUGCAAAUCCUGCAUGUCGAUUGUAUACUAACAAAUUAAAAUGGUGUUAAACUUGUUAGACAAAUUCCUAUUAUUUGCAUUAUCACCUUAACCCCACAUAUAUCCAUAUCCAUCAUUCCUAACCUUAGGAACAAUAUGACUAUACCACUUUUUAUAUGAGUUUUGGUGACACUAGGUUACUAUAAAGCUUAGCCAUGCUUAGAAUGGUCUUCCUUGUCAUUAUGGGCUCAUUACAAACAUGAAAAUUGAUUUAUAAUUAAUCUGGGCAGAACUUUAAUACUUGUGAUUUUGAUAAAUAAAAUGGUGGAAAACAUGGAUUUUAGGUUUAGGCCUCAAGUGGUGCACAUAUGGUGAUUAGUUGUGUACCGAUAGGGGGAGAGUGUGCCCAAACCGACCUAAGGACUUCAC
Sequence
(XR_003241773.1):
GCCGAACCGAAGCUUCACCUCACCCAGCUGCGUCGCCACUCUUCACCCACCAUCCCAGUGCCGAUCCAUCCGAGGGAGGAAGCUCCAACUUUCCCUCUCCACCUCUCUUUCAUCGUCGGCCGCCGAAAAGGGGCACGCCGCCGAUCGCCAACGACGACGGGAACGCGACCUCGUCUACGGAGCUCUGGAGCGCGCUCCAAGCGCCGCCGCAGCCGACAUCGUCGCCGUUCCGACCGCUGUAGACCGAUCCAAGCCGAGCCGUCACGCCAACGCCUUCUCCUUGAAGUCCUCCUCAAAACCCCUCAAUAAUCCCAGGCAACGGCGCAGCAAGUGCGGAGAUCGGCCACCGUCUUCUUCACCUCCGGUUGCCAUCGCCAUUGUCGUUUCCGCCUCCUCCGCUCGUCGUCCCGUUCGAGCCGUCGCCGUUCACCCGCAGAAGGACGCCGUCGCCGGGAGGAUGCGCGAGCCGUUGCUGUCACCAAGACCCCGGAAAACAUCAACCUAACCCGCGGUUUUAGUCUUAGUCUUUGAGUGAUGCGGGUAAUCGACUGCUUCUUCUAGGACUUGAACUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
47.15%
ME_num:
MEP:
36.79%
HE_num:
HEP:
15.85%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.88
Avg Expression:
49.14
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -7.49980217717494 | 2.60074702135593e-103 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -4.10192495206463 | 2.63355314919411e-168 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -7.42783981754615 | 4.9063526448544e-124 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -7.92628437717018 | 1.04650238549852e-52 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -6.56943060830084 | 3.00356456146888e-101 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -7.57936502505213 | 4.86978271301606e-81 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -4.67377871064763 | 1.22778278849088e-163 |
| 8 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 3.74565670007803 | 1.24992961736214e-08 |
| 9 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | 2.12558483281124 | 0.000753956471454061 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 3.84023835548428 | 0.0338960054185806 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 3.79219437595907 | 0.0137111869807269 |
| 12 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -1.95950529380164 | 0.0325583872357805 |
| 13 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 4.83345046855336 | 5.0747339421212e-07 |
| 14 | 9311 // leaf // control--/--9311 // leaf // salt | 2.94111904534364 | 1.03571290472765e-16 |
| 15 | Baldo // leaf // control--/--Baldo // leaf // 100 mM NaCl | 2.0798807959536 | 2.67414214985044e-08 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -8.27917381613774 | 6.15062943588927e-87 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -7.83712091951241 | 1.80462776762976e-128 |
| 18 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 3.17200743444811 | 0.0380387767481768 |
| 19 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 3.55607822934492 | 0.0376006284727965 |
| 20 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 3.43417125121966 | 0.0439444399079524 |
| 21 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 5.92341170582162 | 2.29949957917979e-06 |
| 22 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 5.92332270596403 | 2.33218447778468e-06 |
| 23 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 6.00241711116707 | 1.60373048524986e-06 |
| 24 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 8.59399175596095 | 2.83518304555272e-21 |
| 25 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 4.34464817408067 | 0.000958508658649196 |
| 26 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -5.274230381595 | 0.00122714089421311 |
| 27 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -7.69873247593658 | 1.7662430729955e-92 |
| 28 | 9L136 // leaf // control--/--9L136 // leaf // salt | 3.42141226286653 | 6.39102371095797e-25 |
| 29 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 6.88777337182664 | 6.43944692696112e-23 |
| 30 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -8.69480203856834 | 1.55303082676293e-102 |