Chr:
Chr2
Start:
12903009
End:
12905563
Strand:
+
Ref_name:
LOC9268370
Sequence
(XR_001542928.2):
AUGUAAAAGCCCACUACACCACCUUCUUCAUCUUAUCUCUUUUUCCUCGUUCUCCCCUUCUCUCCCUCACGGCUCACGCUCUCCCAGUGCCGCCGCUUCUUAGGCAGCGCCGGCGACGCCGCCGCUCUCCCUAGCGCCGGCUACCGCGCCCCACUCCGGCGACCCCUCAAGCAGAUGUCCCGCAGCCGCGAAUCGGUUUAUUGGCUCCACGCUUCUCUGCCCCUAAGCUAACCCCAGCCACCAGUCUCCUGCUGCUGCUGCCGCCGUGGAGAUGGCUGGUGGAAACACAGCGCAACUCCGGUGGCUGCAUCCCUUUCCCCCAUAGGAUCUACUCUCCUCCCCUAUUUUAAUUUUUUGGUUACCUCGGUUGAUUCUACCGUGAUUGAAAAAUGUGUGGUUCAGCUCCUCCUCCAGAACUCCAAGUCUUCUCUUCUACUGCUGCUCUUCUGGAUCUAAGGUGAUUUUGCUAGAACUGAGCUUCUCCACCUUGAGCUUGACUGAUUGUUUCCCCCCUCUUGAACUGAACCCCCAUGCUCUACUUGGAACUCAGGUAAUUCUCCUCCUUGGCUCUUGCUCUACUGGUAAUAUUUGACUGCUUCCUGACAUCUUCCUUGAUCUGCUUCUGGUGAUUCUCUUCCUCCUCUUCAGACUGAUCCUCUUGCUUGAUUUUCGCUCCAUCUUGCUUCUUGACCUGAGUUUCAUCUCUUCCUAGAGCUGAAACCCUUCUUCAUCCAAGAACUAAACAACCCUGCUUCUCCUUCAGAUUUGGUUUUCCUCUCUCUGAUUACUUGGCCAUGGUUACUACUACUGUUGGUUCAUGUAUUGGUUUGAGCUGGACUUCAGUUGAGCUAUUUCUCUCUGGGUGGAGCUAACACUUAAGCUAAUUUUUCCUGGAGCUUGGUUCUAUGGUUGUAACUACUACUGCCGCAGCUGCUGCUUGUUUUGGUUUGCACGACCAACCCGAGACUUGGGUUGGAAAUGAUUCACACAAAUUAUUUUAUCAAUGAUAAAUAUUGUACUGGUGAUUCACCUGCUUGCAUGGCUAUUCCCAUCCUGUACUUGUGACACCUCAACAUGGCUUGUUCGGUGGGAUAACCUAAAGCUAUUUGUUAAUUUCCUUAAUUAAUGGAAAAUUGGUAGAGUCUGAGGUGUUUGAUACUUUUGCACUUGAAUCCCUCAAGUCUGGUAAAAUUGGAGGUUACCAUUAGUUUAGGGACUGAUUUGUAAUUUGUUCUAUAACGCAGGGUCCCUUUUUGAAAUAUUACUAAUUACACGAUAUGUUCUCGGCUAAUGUAUUUGUACAAUAUAUGAAAUGCAUACUGUAUAAUAAGAUUUUAAAUAUAUAACUAUAUCCAUGUAUGUAUGGAUGGUUGCAAAACUGUACUGGUCAAUUGUGAAUAAAGUGCUAUAGCUUCCAUGGUGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
5.49%
ME_num:
MEP:
8.74%
HE_num:
HEP:
85.57%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flag_leaf
Tau :
0.57
Avg Expression:
28.28
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -3.61539328714417 | 0.0463458526424173 |
| 2 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -1.17814616665578 | 0.0136845734629913 |
| 3 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h | 1.25840231190752 | 0.0120584791319106 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.17624761136177 | 0.0164575654513923 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.3385680877802 | 0.0487102244335454 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.15052271619423 | 0.000953802860236162 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.04075308510494 | 0.0234256356158744 |
| 8 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.56265115213392 | 8.40883897792628e-08 |
| 9 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.20231361861064 | 2.92338613301172e-06 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.5171876360898 | 0.0194318882517507 |