Chr:
Chr4
Start:
16993825
End:
16996869
Strand:
-
Ref_name:
LOC9268365
Sequence
(XR_001545124.2):
CGCGGCUAGGUCACAAAAAAAUCCCCAAUCCUCGCGUCCACCAGUCAUCCCCAUCGACGCGCUUCCCCAGUCCCCUCGCUCCACCGCCGCACACCAUCGAGGCCCCCACCGCCGCAUCCAGGCCGAGGCCGCCGCACCACGCCCCCAUCCAGGCCGAGGCCGGCGCGGGCGCAUCCCCAUCGAGGGGCCUCCGCCUUCGUCCCCACCUGUGACGGCCACCUCCAUCCACACGCGUCACCGUCUCUAUCGAGCAGUGUCGCCAUUCUCGCGCGAGCACCACCGCCUCUCCUCGCCGGAGUUGCAACCGUCGGGAGGAAUCUCCUUUCCAUCGAGUGUUGCAGCGGCUCAUCGUCCCAAGCUGCUUCUCGAUCUUCUCCACCGAGCACCGCCGUCGGAAGCAUGUCUUAUCCGCCUAGCGUCGCCAUCAAGUGCAAUCCGUCCUCUCCGCCGAGUAUCCGCCGAAGCACGCCAAGCAGACGCCGACUCCACUCCGUGUCUCUACCGAGCAGCACGCCGUCAGCGAGAUCUGUAGCCGCUUCUCCUCGCCAAGCUCAAUGCAGCAUAGCACAAUCGGAGGUUGAAUGCAUGCCUGGAGAAAUUACAACAGCAUAUGUUGCCAUUUCCAGAUUUGACCUGUGUCUCUGAAAUUAAUAUAUAGGAUAUGCUAGAGGUAAGGGAGCAGAAUGGAGGGUGGAGCAGCUAAAUUCUUUCCAUCCUGGUUAGAAAUACUUUGUACCUUGCAUUAAAUUAUAUUCUUCUUGAUGAAUUGAAAUUAAGUUACCUUGUUUCACUGAACAGUUAUGCAAACAUUUAUACUUGGUUAAUCCGUUGUGAUAGAAACCAGUACUUGCUGUGGCUUGAAAUCAUCUUGUACCGGAGUGGCGCAUGCAGAUGGUGCAGCAUGCAGGAUCUUUGGAUUUUUAUUUUUUUCCCUUCAGUUCUUGUUUUUCUGCUCCUGCUUCUAUUUGUACUGUCAAAUUGUUCUCUAAAGAAUACAUUUCAGCACUAAGAUUUGCAAGCAGUUGGUUCCAGUAUCCUAACACGUCCUAUUCUUGUGUAUCUGUUUUUGAUAACCAAUCUUGCCUCUUCUAAACUGUAAUGAGGGGUAGACCAUAAAUUAAAGAUCGAGUUAAUACUAAAGAUUGCUAACACCCUAAUCAAAAUGGAGAUGUUCUGUUAAUUGCUGCUUUGCAUCUUCUUCUGUCGGUCGUGUUUUGCACAGAUUGUGUGAAUUGAAACUCUAAUUCAGUUUUGCUAGAGUGAAUAAGAUUUCAGAUUUUCCUUAUAGUAGAGAAUAAGAUUCAGUUUUUUCCCAAAAUAUAUUAAUCUCCUGGCAAUGCAACACAAAAUGACAAUCAUUUCUUCAAGUGCAUAAUAUUUUGAUGUUCUUUUUGCAUAACAUCAUUGUUUUAAACUAUUUGUGAUAUCAUGCAUGAACUCCAGUAGACGGCCACCUUAAUUUUUUCAUCCUAUGCAAUUGUCACCAGCCGCGUAUUGAAGAGGCUGCAGAGCAUCAUGGAAGCAAUACAUGGAGCUGAUUGCACCAAGCACUCCGCCAUGGUCAGGAUCUAGGUGAGAUGUAGGGCUGGCGACAAAGCAUGGAUGCAAAUGAUUGCUCUAUCCCAACAAUUGGUUGGAUCUCCCUCUUGAUUGAAGGCAUAUAAUGAUCAUGGCAAAGGACUGGGAUUGAUUUGUGUUGUCAAUGAACACAUUUGGUUAGUCAGCCAUGUGUAGCUAGCUAGUUUGUAGAUCCAUUCAUGUUGUGUUCUUGUCUCAUGAUGUUCUUAUGUUCACAUGACAUUAUUCUAUGAUUCUAAUAUAUUUAUGUGAUGCUUUCCUAUA
Sequence
(XR_001545125.2):
CGGCUAGGUCACAAAAAAAUCCCCAAUCCUCGCGUCCACCAGUCAUCCCCAUCGACGCGCUUCCCCAGUCCCCUCGCUCCACCGCCGCACACCAUCGAGGCCCCCACCGCCGCAUCCAGGCCGAGGCCGCCGCACCACGCCCCCAUCCAGGCCGAGGCCGGCGCGGGCGCAUCCCCAUCGAGGGGCCUCCGCCUUCGUCCCCACCUGUGACGGCCACCUCCAUCCACACGCGUCACCGUCUCUAUCGAGCAGUGUCGCCAUUCUCGCGCGAGCACCACCGCCUCUCCUCGCCGGAGUUGCAACCGUCGGGAGGAAUCUCCUUUCCAUCGAGUGUUGCAGCGGCUCAUCGUCCCAAGCUGCUUCUCGAUCUUCUCCACCGAGCACCGCCGUCGGAAGCAUGUCUUAUCCGCCUAGCGUCGCCAUCAAGUGCAAUCCGUCCUCUCCGCCGAGUAUCCGCCGAAGCACGCCAAGCAGACGCCGACUCCACUCCGUGUCUCUACCGAGCAGCACGCCGUCAGCGAGAUCUGUAGCCGCUUCUCCUCGCCAAGCUCAAUGCAGCAUAGCACAAUCGGAGGUUGAAUGCAUGCCUGGAGAAAUUACAACAGCAUAUGUUGCCAUUUCCAGAUUUGACCUGUGUCUCUGAAAUUAAUAUAUAGGAUAUGCUAGAGCCGCGUAUUGAAGAGGCUGCAGAGCAUCAUGGAAGCAAUACAUGGAGCUGAUUGCACCAAGCACUCCGCCAUGGUCAGGAUCUAGGUGAGAUGUAGGGCUGGCGACAAAGCAUGGAUGCAAAUGAUUGCUCUAUCCCAACAAUUGGUUGGAUCUCCCUCUUGAUUGAAGGCAUAUAAUGAUCAUGGCAAAGGACUGGGAUUGAUUUGUGUUGUCAAUGAACACAUUUGGUUAGUCAGCCAUGUGUAGCUAGCUAGUUUGUAGAUCCAUUCAUGUUGUGUUCUUGUCUCAUGAUGUUCUUAUGUUCACAUGACAUUAUUCUAUGAUUCUAAUAUAUUUAUGUGAUGCUUUCCUAUA
Sequence
(XR_003241746.1):
GCGGCUAGGUCACAAAAAAAUCCCCAAUCCUCGCGUCCACCAGUCAUCCCCAUCGACGCGCUUCCCCAGUCCCCUCGCUCCACCGCCGCACACCAUCGAGGCCCCCACCGCCGCAUCCAGGCCGAGGCCGCCGCACCACGCCCCCAUCCAGGCCGAGGCCGGCGCGGGCGCAUCCCCAUCGAGGGGCCUCCGCCUUCGUCCCCACCUGUGACGGCCACCUCCAUCCACACGCGUCACCGUCUCUAUCGAGCAGUGUCGCCAUUCUCGCGCGAGCACCACCGCCUCUCCUCGCCGGAGUUGCAACCGUCGGGAGGAAUCUCCUUUCCAUCGAGUGUUGCAGCGGCUCAUCGUCCCAAGCUGCUUCUCGAUCUUCUCCACCGAGCACCGCCGUCGGAAGCAUGUCUUAUCCGCCUAGCGUCGCCAUCAAGUGCAAUCCGUCCUCUCCGCCGAGUAUCCGCCGAAGCACGCCAAGCAGACGCCGACUCCACUCCGUGUCUCUACCGAGCAGCACGCCGUCAGCGAGAUCUGUAGCCGCUUCUCCUCGCCAAGCUCAAUGCAGCAUAGCACAAUCGGAGGUUGAAUGCAUGCCUGGAGAAAUUACAACAGCAUAUGUUGCCAUUUCCAGAUUUGACCUGUGUCUCUGAAAUUAAUAUAUAGGAUAUGCUAGAGGUAAGGGAGCAGAAUGGAGGGUGGAGCAGCUAAAUUCUUUCCAUCCUGAAACCAGUACUUGCUGUGGCUUGAAAUCAUCUUGUACCGGAGUGGCGCAUGCAGAUGGUGCAGCAUGCAGGAUCUUUGGAUUUUUAUUUUUUUCCCUUCAGUUCUUGUUUUUCUGCUCCUGCUUCUAUUUGUACUGUCAAAUUGUUCUCUAAAGAAUACAUUUCAGCACUAAGAUUUGCAAGCAGUUGGUUCCAGUAUCCUAACACGUCCUAUUCUUGUGUAUCUGUUUUUGAUAACCAAUCUUGCCUCUUCUAAACUGUAAUGAGGGGUAGACCAUAAAUUAAAGAUCGAGUUAAUACUAAAGAUUGCUAACACCCUAAUCAAAAUGGAGAUGUUCUGUUAAUUGCUGCUUUGCAUCUUCUUCUGUCGGUCGUGUUUUGCACAGAUUGUGUGAAUUGAAACUCUAAUUCAGUUUUGCUAGAGUGAAUAAGAUUUCAGAUUUUCCUUAUAGUAGAGAAUAAGAUUCAGUUUUUUCCCAAAAUAUAUUAAUCUCCUGGCAAUGCAACACAAAAUGACAAUCAUUUCUUCAAGUGCAUAAUAUUUUGAUGUUCUUUUUGCAUAACAUCAUUGUUUUAAACUAUUUGUGAUAUCAUGCAUGAACUCCAGUAGACGGCCACCUUAAUUUUUUCAUCCUAUGCAAUUGUCACCAGCCGCGUAUUGAAGAGGCUGCAGAGCAUCAUGGAAGCAAUACAUGGAGCUGAUUGCACCAAGCACUCCGCCAUGGUCAGGAUCUAGGUGAGAUGUAGGGCUGGCGACAAAGCAUGGAUGCAAAUGAUUGCUCUAUCCCAACAAUUGGUUGGAUCUCCCUCUUGAUUGAAGGCAUAUAAUGAUCAUGGCAAAGGACUGGGAUUGAUUUGUGUUGUCAAUGAACACAUUUGGUUAGUCAGCCAUGUGUAGCUAGCUAGUUUGUAGAUCCAUUCAUGUUGUGUUCUUGUCUCAUGAUGUUCUUAUGUUCACAUGACAUUAUUCUAUGAUUCUAAUAUAUUUAUGUGAUGCUUUCCUAUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
71.95%
ME_num:
MEP:
14.02%
HE_num:
HEP:
13.82%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.91
Avg Expression:
14.33
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -10.5343083489407 | 5.86981816446691e-15 |
| 2 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -1.21621006090496 | 0.000853337982055625 |
| 3 | Nipponbare // shoot_apical_meristem // 0_days_after_shift--/--Nipponbare // shoot_apical_meristem // 12_days_after_shift | -1.15347999216888 | 0.0164674367615094 |
| 4 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.7862861585867 | 2.49342541370709e-11 |
| 5 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -7.54344148819234 | 0.000209885486039594 |
| 6 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -3.22912476806615 | 0.000312923722890201 |
| 7 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | -1.22238964262775 | 0.0233003722975698 |
| 8 | Nipponbare // leaf // Drought;Long_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.36899949081482 | 0.00112304594858036 |
| 9 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.78102269115607 | 1.66731161787666e-08 |