Chr:
Chr11
Start:
20278383
End:
20281464
Strand:
-
Ref_name:
LOC9268344
Sequence
(XR_001541684.2):
CACGCGAGGUCCGCCAUGGCGCCAGGUCCCAGCUCGGAUCCCCAUCGCGCCCGUCCGCUCCAGCCGUCACCAACUAUAUCUGGCAGCGGUAAAGGAGCAGUGGACGCAGCAUCUUCGGUCCCCUCUACCUCCGUUGCCCGCGUGCCCUAUCAUCUCGCGGCGAAAAAGGAGUAGUCCACGCGGUGUCUUCUGACGGUAAUCGACGACCUCGAGGUUGGUUCCUGAACAGGUUCAUCUCGCACCUCUCCUUUUUCUUGAAAUUACUGAUUUUGCCUAAAGUACUCAAGUGUGAUGAGUAUAACAGAAAUUUUGGGUAUAUGUAUGCUAGGAUUCAUGUGGUGCAAUAGCACACAUUUGAUGCUUAAUAAUAUGGAUUUAACACACUCUCCAUUCAGUUAUGUUGGCCUUUUUCUCCCGAGUGCAACGGAGGUUAUAAAAUACUGUCGCACAAACCUAUUGUGUGUUCGCGUAAAUAUCCUUAUCUCUUGCUCUAUCGUCUUAGGGAUCGAACUCCUGGUUCUGCCUUCCAAGGAGGAAAGAAGCAAAUUUUAGACAUUUCACAAUUGGAUUGUUUACAUGUGACGUAUUAUUUUUAUUCAAAUUAUGAGUUUCUAUGUGAAAUUACUCGUCUGAAAAUUGUUGUGGAUUUUACAUCUUUCUAUCCCUCCCGAAUGCUAAUAUUAGCUGAUUUGUGUCCUGACUCAUUUCAAUGGCUUGCAGAUAUACUAAAAGGAAAAUAAAGGUGAUGUAACUGUAACUAGCACCUUCAGGGCCAUUAGGUCGGAUACAAAAAUUGGUGGAGACUGGAGACGUUCUGCAACUAAAUCAAACUCUACUUUUUUUUUCUGAAUAUCAGCUAACAACAUUUCUAAUUUCUGAUGGAGUAGAUUUGUUGUCUAGUCAAAUUGAAAGGGGAAAAACUUUUAUAUCAAAUCACUGCCGGCAUAUCAAAUUUACUGAUAUACAUCUCUGCCAUCUUAUCAGAUUUUGACGGCUAUUAUUUAUCUUCAUGCUUGAAUUAUUAUUUAUCUUCAUGCUUGAAUUCUUACAGUCAUUUUGAAAUUAGAUUGGGCGUGGAACUUCCUGCUACUACUGCUGUUUUAAUUAUCUUUACUGGCAGUACAGUUAUUAUCAUGGAAUAAUCUGUUUUAAUAAUCUUAUUUUAGAUCAGUAUGCAAAUCCAUGUAACUUUACUCGAUUUCACCCAUUAACAUACCAAUCAUUUCCCAGACCUGCAGAUUGACAACUUAUUAAUUACUGUUAGUAGCUUUGAAAAAUAACCCUUAGAUAAAAAUUAAACAUGUAGAUUGAAGUAUUUUUAUUUUUAUUUAACGAUGCACUGAACUUUUUACUGCAUAAUAGGCUGCGUUGGCGUGGAGAUGCACAUGCAAGUUGAUAGCUGAUAGCAAUGAGUAAAUCGAAUAGCUGCUCAGUUCCUCCUCUGCAUUCUAACAUGCUGAGCAACCGGCGUUGAGGACCUCCUUGGCACCCGAGAAGAGGUUGUUGGUCUGGAGCGGUACUGAAGGCAGGCAAUAUUUCCUAAACACUUCAAAAUGGAUAGAGGAAUUCAGAACUGAGGGGCAGUGAUUUCUAUAAUUGUGCUGAUUAGGAACAAAACUGAUCGUGUUGACAAGAGAUUGGACGGAGGCAUAUAACCUCUUCAAAGAACCAAGGUAUCAAGGAUCUUCCUGUCAAUGUAAAAUAAAAAAAUAAACAAUCUCUGUUGGUAGGUAAUACUACAAUGUUGAGAUAAUACUCCAUCUCAGUGGCCGAUGACAAUGCAGAGGAAUAGUUUCUAGAGCCAAAGGGUGAACAUCAAGGUUUAAUACUUCAAGGUUUAAGUUGCAACUUACGCACUACUGCACCAACCUACUUGUGCCGUUUAGACAUCAUUUUUUAUAGUGCUGUAGAUGUUAGAUUAUUGUCACAGAGCCAAUUAAAAUUUUUAAAAUUUGUUUACCUCCUUUGUGCUUCAAGAUUUGUGAAUAUGCUUUCUCCUAUAUCUAUGAGACUGUGCAAACGCAUCCUGAAGAUUUAGCAGACAAUGUGUUUCACUGCUGGUCAAAGGUAUUUAUGUAUUGUAUCAAACAUGUCUACGUUUGACCUAUUUAUUAUAUAUAUCAGAUUCAGAUUGAUAAAUAUUUAAACAA
Sequence
(XR_003239437.1):
CACGCGAGGUCCGCCAUGGCGCCAGGUCCCAGCUCGGAUCCCCAUCGCGCCCGUCCGCUCCAGCCGUCACCAACUAUAUCUGGCAGCGGUAAAGGAGCAGUGGACGCAGCAUCUUCGGUCCCCUCUACCUCCGUUGCCCGCGUGCCCUAUCAUCUCGCGGCGAAAAAGGAGUAGUCCACGCGGUGUCUUCUGACGGUAAUCGACGACCUCGAGAUAUACUAAAAGGAAAAUAAAGGUGAUGUAACUGUAACUAGCACCUUCAGGGCCAUUAGGUCGGAUACAAAAAUUGGUGGAGACUGGAGACGUUCUGCAACUAAAUCAAACUCUACUUUUUUUUUCUGAAUAUCAGCUAACAACAUUUCUAAUUUCUGAUGGAGUAGAUUUGUUGUCUAGUCAAAUUGAAAGGGGAAAAACUUUUAUAUCAAAUCACUGCCGGCAUAUCAAAUUUACUGAUAUACAUCUCUGCCAUCUUAUCAGAUUUUGACGGCUAUUAUUUAUCUUCAUGCUUGAAUUAUUAUUUAUCUUCAUGCUUGAAUUCUUACAGUCAUUUUGAAAUUAGAUUGGGCGUGGAACUUCCUGCUACUACUGCUGUUUUAAUUAUCUUUACUGGCAGUACAGUUAUUAUCAUGGAAUAAUCUGUUUUAAUAAUCUUAUUUUAGAUCAGUAUGCAAAUCCAUGUAACUUUACUCGAUUUCACCCAUUAACAUACCAAUCAUUUCCCAGACCUGCAGAUUGACAACUUAUUAAUUACUGUUAGUAGCUUUGAAAAAUAACCCUUAGAUAAAAAUUAAACAUGUAGAUUGAAGUAUUUUUAUUUUUAUUUAACGAUGCACUGAACUUUUUACUGCAUAAUAGGCUGCGUUGGCGUGGAGAUGCACAUGCAAGUUGAUAGCUGAUAGCAAUGAGUAAAUCGAAUAGCUGCUCAGUUCCUCCUCUGCAUUCUAACAUGCUGAGCAACCGGCGUUGAGGACCUCCUUGGCACCCGAGAAGAGGUUGUUGGUCUGGAGCGGUACUGAAGGCAGGCAAUAUUUCCUAAACACUUCAAAAUGGAUAGAGGAAUUCAGAACUGAGGGGCAGUGAUUUCUAUAAUUGUGCUGAUUAGGAACAAAACUGAUCGUGUUGACAAGAGAUUGGACGGAGGCAUAUAACCUCUUCAAAGAACCAAGGUAUCAAGGAUCUUCCUGUCAAUGUAAAAUAAAAAAAUAAACAAUCUCUGUUGGUAGGUAAUACUACAAUGUUGAGAUAAUACUCCAUCUCAGUGGCCGAUGACAAUGCAGAGGAAUAGUUUCUAGAGCCAAAGGGUGAACAUCAAGGUUUAAUACUUCAAGGUUUAAGUUGCAACUUACGCACUACUGCACCAACCUACUUGUGCCGUUUAGACAUCAUUUUUUAUAGUGCUGUAGAUGUUAGAUUAUUGUCACAGAGCCAAUUAAAAUUUUUAAAAUUUGUUUACCUCCUUUGUGCUUCAAGAUUUGUGAAUAUGCUUUCUCCUAUAUCUAUGAGACUGUGCAAACGCAUCCUGAAGAUUUAGCAGACAAUGUGUUUCACUGCUGGUCAAAGGUAUUUAUGUAUUGUAUCAAACAUGUCUACGUUUGACCUAUUUAUUAUAUAUAUCAGAUUCAGAUUGAUAAAUAUUUAAACAA
Sequence
(XR_003239438.1):
CACGCGAGGUCCGCCAUGGCGCCAGGUCCCAGCUCGGAUCCCCAUCGCGCCCGUCCGCUCCAGCCGUCACCAACUAUAUCUGGCAGCGGUAAAGGAGCAGUGGACGCAGCAUCUUCGGUCCCCUCUACCUCCGUUGCCCGCGUGCCCUAUCAUCUCGCGGCGAAAAAGGAGUAGUCCACGCGGUGUCUUCUGACGGUAAUCGACGACCUCGAGGUUGGUUCCUGAACAGAUAUACUAAAAGGAAAAUAAAGGUGAUGUAACUGUAACUAGCACCUUCAGGGCCAUUAGGUCGGAUACAAAAAUUGGUGGAGACUGGAGACGUUCUGCAACUAAAUCAAACUCUACUUUUUUUUUCUGAAUAUCAGCUAACAACAUUUCUAAUUUCUGAUGGAGUAGAUUUGUUGUCUAGUCAAAUUGAAAGGGGAAAAACUUUUAUAUCAAAUCACUGCCGGCAUAUCAAAUUUACUGAUAUACAUCUCUGCCAUCUUAUCAGAUUUUGACGGCUAUUAUUUAUCUUCAUGCUUGAAUUAUUAUUUAUCUUCAUGCUUGAAUUCUUACAGUCAUUUUGAAAUUAGAUUGGGCGUGGAACUUCCUGCUACUACUGCUGUUUUAAUUAUCUUUACUGGCAGUACAGUUAUUAUCAUGGAAUAAUCUGUUUUAAUAAUCUUAUUUUAGAUCAGUAUGCAAAUCCAUGUAACUUUACUCGAUUUCACCCAUUAACAUACCAAUCAUUUCCCAGACCUGCAGAUUGACAACUUAUUAAUUACUGUUAGUAGCUUUGAAAAAUAACCCUUAGAUAAAAAUUAAACAUGUAGAUUGAAGUAUUUUUAUUUUUAUUUAACGAUGCACUGAACUUUUUACUGCAUAAUAGGCUGCGUUGGCGUGGAGAUGCACAUGCAAGUUGAUAGCUGAUAGCAAUGAGUAAAUCGAAUAGCUGCUCAGUUCCUCCUCUGCAUUCUAACAUGCUGAGCAACCGGCGUUGAGGACCUCCUUGGCACCCGAGAAGAGGUUGUUGGUCUGGAGCGGUACUGAAGGCAGGCAAUAUUUCCUAAACACUUCAAAAUGGAUAGAGGAAUUCAGAACUGAGGGGCAGUGAUUUCUAUAAUUGUGCUGAUUAGGAACAAAACUGAUCGUGUUGACAAGAGAUUGGACGGAGGCAUAUAACCUCUUCAAAGAACCAAGGUAUCAAGGAUCUUCCUGUCAAUGUAAAAUAAAAAAAUAAACAAUCUCUGUUGGUAGGUAAUACUACAAUGUUGAGAUAAUACUCCAUCUCAGUGGCCGAUGACAAUGCAGAGGAAUAGUUUCUAGAGCCAAAGGGUGAACAUCAAGGUUUAAUACUUCAAGGUUUAAGUUGCAACUUACGCACUACUGCACCAACCUACUUGUGCCGUUUAGACAUCAUUUUUUAUAGUGCUGUAGAUGUUAGAUUAUUGUCACAGAGCCAAUUAAAAUUUUUAAAAUUUGUUUACCUCCUUUGUGCUUCAAGAUUUGUGAAUAUGCUUUCUCCUAUAUCUAUGAGACUGUGCAAACGCAUCCUGAAGAUUUAGCAGACAAUGUGUUUCACUGCUGGUCAAAGGUAUUUAUGUAUUGUAUCAAACAUGUCUACGUUUGACCUAUUUAUUAUAUAUAUCAGAUUCAGAUUGAUAAAUAUUUAAACAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
3.05%
ME_num:
MEP:
12.4%
HE_num:
HEP:
84.35%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.82
Avg Expression:
82.84
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -2.36497834676109 | 1.06663486009434e-09 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.0717460714421 | 2.04047045005637e-06 |
3 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | -1.08102587911688 | 1.00495425262592e-08 |
4 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.76559190550722 | 2.17715717836656e-07 |