OSA-LNC9268344


Function Link


Basic Info

Chr:

Chr11

Start:

20278383

End:

20281464

Strand:

-

Ref_name:

LOC9268344

Sequence
(XR_001541684.2):

CACGCGAGGUCCGCCAUGGCGCCAGGUCCCAGCUCGGAUCCCCAUCGCGCCCGUCCGCUCCAGCCGUCACCAACUAUAUCUGGCAGCGGUAAAGGAGCAGUGGACGCAGCAUCUUCGGUCCCCUCUACCUCCGUUGCCCGCGUGCCCUAUCAUCUCGCGGCGAAAAAGGAGUAGUCCACGCGGUGUCUUCUGACGGUAAUCGACGACCUCGAGGUUGGUUCCUGAACAGGUUCAUCUCGCACCUCUCCUUUUUCUUGAAAUUACUGAUUUUGCCUAAAGUACUCAAGUGUGAUGAGUAUAACAGAAAUUUUGGGUAUAUGUAUGCUAGGAUUCAUGUGGUGCAAUAGCACACAUUUGAUGCUUAAUAAUAUGGAUUUAACACACUCUCCAUUCAGUUAUGUUGGCCUUUUUCUCCCGAGUGCAACGGAGGUUAUAAAAUACUGUCGCACAAACCUAUUGUGUGUUCGCGUAAAUAUCCUUAUCUCUUGCUCUAUCGUCUUAGGGAUCGAACUCCUGGUUCUGCCUUCCAAGGAGGAAAGAAGCAAAUUUUAGACAUUUCACAAUUGGAUUGUUUACAUGUGACGUAUUAUUUUUAUUCAAAUUAUGAGUUUCUAUGUGAAAUUACUCGUCUGAAAAUUGUUGUGGAUUUUACAUCUUUCUAUCCCUCCCGAAUGCUAAUAUUAGCUGAUUUGUGUCCUGACUCAUUUCAAUGGCUUGCAGAUAUACUAAAAGGAAAAUAAAGGUGAUGUAACUGUAACUAGCACCUUCAGGGCCAUUAGGUCGGAUACAAAAAUUGGUGGAGACUGGAGACGUUCUGCAACUAAAUCAAACUCUACUUUUUUUUUCUGAAUAUCAGCUAACAACAUUUCUAAUUUCUGAUGGAGUAGAUUUGUUGUCUAGUCAAAUUGAAAGGGGAAAAACUUUUAUAUCAAAUCACUGCCGGCAUAUCAAAUUUACUGAUAUACAUCUCUGCCAUCUUAUCAGAUUUUGACGGCUAUUAUUUAUCUUCAUGCUUGAAUUAUUAUUUAUCUUCAUGCUUGAAUUCUUACAGUCAUUUUGAAAUUAGAUUGGGCGUGGAACUUCCUGCUACUACUGCUGUUUUAAUUAUCUUUACUGGCAGUACAGUUAUUAUCAUGGAAUAAUCUGUUUUAAUAAUCUUAUUUUAGAUCAGUAUGCAAAUCCAUGUAACUUUACUCGAUUUCACCCAUUAACAUACCAAUCAUUUCCCAGACCUGCAGAUUGACAACUUAUUAAUUACUGUUAGUAGCUUUGAAAAAUAACCCUUAGAUAAAAAUUAAACAUGUAGAUUGAAGUAUUUUUAUUUUUAUUUAACGAUGCACUGAACUUUUUACUGCAUAAUAGGCUGCGUUGGCGUGGAGAUGCACAUGCAAGUUGAUAGCUGAUAGCAAUGAGUAAAUCGAAUAGCUGCUCAGUUCCUCCUCUGCAUUCUAACAUGCUGAGCAACCGGCGUUGAGGACCUCCUUGGCACCCGAGAAGAGGUUGUUGGUCUGGAGCGGUACUGAAGGCAGGCAAUAUUUCCUAAACACUUCAAAAUGGAUAGAGGAAUUCAGAACUGAGGGGCAGUGAUUUCUAUAAUUGUGCUGAUUAGGAACAAAACUGAUCGUGUUGACAAGAGAUUGGACGGAGGCAUAUAACCUCUUCAAAGAACCAAGGUAUCAAGGAUCUUCCUGUCAAUGUAAAAUAAAAAAAUAAACAAUCUCUGUUGGUAGGUAAUACUACAAUGUUGAGAUAAUACUCCAUCUCAGUGGCCGAUGACAAUGCAGAGGAAUAGUUUCUAGAGCCAAAGGGUGAACAUCAAGGUUUAAUACUUCAAGGUUUAAGUUGCAACUUACGCACUACUGCACCAACCUACUUGUGCCGUUUAGACAUCAUUUUUUAUAGUGCUGUAGAUGUUAGAUUAUUGUCACAGAGCCAAUUAAAAUUUUUAAAAUUUGUUUACCUCCUUUGUGCUUCAAGAUUUGUGAAUAUGCUUUCUCCUAUAUCUAUGAGACUGUGCAAACGCAUCCUGAAGAUUUAGCAGACAAUGUGUUUCACUGCUGGUCAAAGGUAUUUAUGUAUUGUAUCAAACAUGUCUACGUUUGACCUAUUUAUUAUAUAUAUCAGAUUCAGAUUGAUAAAUAUUUAAACAA

Sequence
(XR_003239437.1):

CACGCGAGGUCCGCCAUGGCGCCAGGUCCCAGCUCGGAUCCCCAUCGCGCCCGUCCGCUCCAGCCGUCACCAACUAUAUCUGGCAGCGGUAAAGGAGCAGUGGACGCAGCAUCUUCGGUCCCCUCUACCUCCGUUGCCCGCGUGCCCUAUCAUCUCGCGGCGAAAAAGGAGUAGUCCACGCGGUGUCUUCUGACGGUAAUCGACGACCUCGAGAUAUACUAAAAGGAAAAUAAAGGUGAUGUAACUGUAACUAGCACCUUCAGGGCCAUUAGGUCGGAUACAAAAAUUGGUGGAGACUGGAGACGUUCUGCAACUAAAUCAAACUCUACUUUUUUUUUCUGAAUAUCAGCUAACAACAUUUCUAAUUUCUGAUGGAGUAGAUUUGUUGUCUAGUCAAAUUGAAAGGGGAAAAACUUUUAUAUCAAAUCACUGCCGGCAUAUCAAAUUUACUGAUAUACAUCUCUGCCAUCUUAUCAGAUUUUGACGGCUAUUAUUUAUCUUCAUGCUUGAAUUAUUAUUUAUCUUCAUGCUUGAAUUCUUACAGUCAUUUUGAAAUUAGAUUGGGCGUGGAACUUCCUGCUACUACUGCUGUUUUAAUUAUCUUUACUGGCAGUACAGUUAUUAUCAUGGAAUAAUCUGUUUUAAUAAUCUUAUUUUAGAUCAGUAUGCAAAUCCAUGUAACUUUACUCGAUUUCACCCAUUAACAUACCAAUCAUUUCCCAGACCUGCAGAUUGACAACUUAUUAAUUACUGUUAGUAGCUUUGAAAAAUAACCCUUAGAUAAAAAUUAAACAUGUAGAUUGAAGUAUUUUUAUUUUUAUUUAACGAUGCACUGAACUUUUUACUGCAUAAUAGGCUGCGUUGGCGUGGAGAUGCACAUGCAAGUUGAUAGCUGAUAGCAAUGAGUAAAUCGAAUAGCUGCUCAGUUCCUCCUCUGCAUUCUAACAUGCUGAGCAACCGGCGUUGAGGACCUCCUUGGCACCCGAGAAGAGGUUGUUGGUCUGGAGCGGUACUGAAGGCAGGCAAUAUUUCCUAAACACUUCAAAAUGGAUAGAGGAAUUCAGAACUGAGGGGCAGUGAUUUCUAUAAUUGUGCUGAUUAGGAACAAAACUGAUCGUGUUGACAAGAGAUUGGACGGAGGCAUAUAACCUCUUCAAAGAACCAAGGUAUCAAGGAUCUUCCUGUCAAUGUAAAAUAAAAAAAUAAACAAUCUCUGUUGGUAGGUAAUACUACAAUGUUGAGAUAAUACUCCAUCUCAGUGGCCGAUGACAAUGCAGAGGAAUAGUUUCUAGAGCCAAAGGGUGAACAUCAAGGUUUAAUACUUCAAGGUUUAAGUUGCAACUUACGCACUACUGCACCAACCUACUUGUGCCGUUUAGACAUCAUUUUUUAUAGUGCUGUAGAUGUUAGAUUAUUGUCACAGAGCCAAUUAAAAUUUUUAAAAUUUGUUUACCUCCUUUGUGCUUCAAGAUUUGUGAAUAUGCUUUCUCCUAUAUCUAUGAGACUGUGCAAACGCAUCCUGAAGAUUUAGCAGACAAUGUGUUUCACUGCUGGUCAAAGGUAUUUAUGUAUUGUAUCAAACAUGUCUACGUUUGACCUAUUUAUUAUAUAUAUCAGAUUCAGAUUGAUAAAUAUUUAAACAA

Sequence
(XR_003239438.1):

CACGCGAGGUCCGCCAUGGCGCCAGGUCCCAGCUCGGAUCCCCAUCGCGCCCGUCCGCUCCAGCCGUCACCAACUAUAUCUGGCAGCGGUAAAGGAGCAGUGGACGCAGCAUCUUCGGUCCCCUCUACCUCCGUUGCCCGCGUGCCCUAUCAUCUCGCGGCGAAAAAGGAGUAGUCCACGCGGUGUCUUCUGACGGUAAUCGACGACCUCGAGGUUGGUUCCUGAACAGAUAUACUAAAAGGAAAAUAAAGGUGAUGUAACUGUAACUAGCACCUUCAGGGCCAUUAGGUCGGAUACAAAAAUUGGUGGAGACUGGAGACGUUCUGCAACUAAAUCAAACUCUACUUUUUUUUUCUGAAUAUCAGCUAACAACAUUUCUAAUUUCUGAUGGAGUAGAUUUGUUGUCUAGUCAAAUUGAAAGGGGAAAAACUUUUAUAUCAAAUCACUGCCGGCAUAUCAAAUUUACUGAUAUACAUCUCUGCCAUCUUAUCAGAUUUUGACGGCUAUUAUUUAUCUUCAUGCUUGAAUUAUUAUUUAUCUUCAUGCUUGAAUUCUUACAGUCAUUUUGAAAUUAGAUUGGGCGUGGAACUUCCUGCUACUACUGCUGUUUUAAUUAUCUUUACUGGCAGUACAGUUAUUAUCAUGGAAUAAUCUGUUUUAAUAAUCUUAUUUUAGAUCAGUAUGCAAAUCCAUGUAACUUUACUCGAUUUCACCCAUUAACAUACCAAUCAUUUCCCAGACCUGCAGAUUGACAACUUAUUAAUUACUGUUAGUAGCUUUGAAAAAUAACCCUUAGAUAAAAAUUAAACAUGUAGAUUGAAGUAUUUUUAUUUUUAUUUAACGAUGCACUGAACUUUUUACUGCAUAAUAGGCUGCGUUGGCGUGGAGAUGCACAUGCAAGUUGAUAGCUGAUAGCAAUGAGUAAAUCGAAUAGCUGCUCAGUUCCUCCUCUGCAUUCUAACAUGCUGAGCAACCGGCGUUGAGGACCUCCUUGGCACCCGAGAAGAGGUUGUUGGUCUGGAGCGGUACUGAAGGCAGGCAAUAUUUCCUAAACACUUCAAAAUGGAUAGAGGAAUUCAGAACUGAGGGGCAGUGAUUUCUAUAAUUGUGCUGAUUAGGAACAAAACUGAUCGUGUUGACAAGAGAUUGGACGGAGGCAUAUAACCUCUUCAAAGAACCAAGGUAUCAAGGAUCUUCCUGUCAAUGUAAAAUAAAAAAAUAAACAAUCUCUGUUGGUAGGUAAUACUACAAUGUUGAGAUAAUACUCCAUCUCAGUGGCCGAUGACAAUGCAGAGGAAUAGUUUCUAGAGCCAAAGGGUGAACAUCAAGGUUUAAUACUUCAAGGUUUAAGUUGCAACUUACGCACUACUGCACCAACCUACUUGUGCCGUUUAGACAUCAUUUUUUAUAGUGCUGUAGAUGUUAGAUUAUUGUCACAGAGCCAAUUAAAAUUUUUAAAAUUUGUUUACCUCCUUUGUGCUUCAAGAUUUGUGAAUAUGCUUUCUCCUAUAUCUAUGAGACUGUGCAAACGCAUCCUGAAGAUUUAGCAGACAAUGUGUUUCACUGCUGGUCAAAGGUAUUUAUGUAUUGUAUCAAACAUGUCUACGUUUGACCUAUUUAUUAUAUAUAUCAGAUUCAGAUUGAUAAAUAUUUAAACAA


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

15

LEP:

3.05%

ME_num:

61

MEP:

12.4%

HE_num:

415

HEP:

84.35%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

caryopsis

Tau :

0.82

Avg Expression:

82.84

Tip: OSA-LNC9268344 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h-2.364978346761091.06663486009434e-09
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA1.07174607144212.04047045005637e-06
3Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min"-1.081025879116881.00495425262592e-08
4Nipponbare // panicle // AM--/--Nipponbare // panicle // PM1.765591905507222.17715717836656e-07