Chr:
Chr9
Start:
13273177
End:
13277265
Strand:
-
Ref_name:
LOC9268302
Sequence
(XR_001539727.2):
UCCUCUCCCUGACGCGUCGCCCUCGUCUCCACUUCAUUUCCACACCGAGGAAGCCGAGGGAGAGAGCUUCAGCUCUCCCUCUCCACCUCUUGCUCGUCGUCGACCGCCAAGAAGGAGGAGCUCGCAUUCAUCGUCGAGCCAUCGUCAUCACUAACUCUUUCUCGUUCCAUAUUCCUCACUUCAUGCCUACCACUUUACCCUUUGACACCAUCUCAUUUCAUCCAUUGUAGCGACGGGAACGCCGCCGUGCCCACGAGUGUUCCAGUGCGUGCACCGAGCGCCGCAGCAGCGACAUCGUCGCCGUUGCCGUCGAUUUAGACCAAGCCGGAGCGAGCCACCACCCACCAGCUUCGCGAAGUCCUCUCUAUUUCCCCUCAAAAAUCCCGAAGAAUGACGUAUCGAGGAAGGAGAACGGCCUCCAUCGUCUACAACUCCGGCCACCGUCGCCAUGGCCAAAUUCUCCUUCGCCGGUUCCCUCGUCGAUUAUUUCGUGCAUGCACCAUCCCUGGGAUCUAAUAAACCUCUUGGACAGGCAUGCAUGGCCACUCUUCAAGUAGAUCGAGCCGUCACCGUUCACCCCGGAGGUUCUUGCCGCCGCCGCCAAUUCCGUCCAUCGCCAAGACCCUGUCAGGCCUCUAGAAGCCACGGUGUUAGACUUAGCCUUUUGAGUGAUGCGGGUAAUCGACUGCUUCUUUUAGGAUCUGAACUUAAUGGGGGUAAACCCUAGUCGGUUUGCUUGAGGAUUGGGUAGUCAAGCUUUCGCUGUUCUAAUAUCUAUGUUCGGCCGGUCGGCUUAUGUAAUUAUGAAGUAGUUGUGAUUUAGAUCAAUUUUAUCUUAAAUGUAUUUUGCUAUGUAUUUCCAUGCUUAAGAUGAAAGUGUGAAUCUAGUGCACAUCCUGGGAACUAGAUUCACAUAAGUAUGAGUUAAGAAUAUUUGGGAUGUUGUAGAUCUUUAGCCUUUUUUAUCAAGUCUUCUUAAUGUGUAACACAUCCUUCGAGUGGUUUGACGGGCACAUUUCAGGCUGAAGUUGACUGGCAGGCUAAAGGCCCAGUAAUGUCUUCAAUAUUUUUGUCUC
Sequence
(XR_001539728.2):
CUCCUCUCCCUGACGCGUCGCCCUCGUCUCCACUUCAUUUCCACACCGAGGAAGCCGAGGGAGAGAGCUUCAGCUCUCCCUCUCCACCUCUUGCUCGUCGUCGACCGCCAAGAAGGAGGAGCUCGCAUUCAUCGUCGAGCCAUCGUCAUCACUAACUCUUUCUCGUUCCAUAUUCCUCACUUCAUGCCUACCACUUUACCCUUUGACACCAUCUCAUUUCAUCCAUUGUAGCGACGGGAACGCCGCCGUGCCCACGAGUGUUCCAGUGCGUGCACCGAGCGCCGCAGCAGCGACAUCGUCGCCGUUGCCGUCGAUUUAGACCAAGCCGGAGCGAGCCACCACCCACCAGCUUCGCGAAGUCCUCUCUAUUUCCCCUCAAAAAUCCCGAAGAAUGACGUAUCGAGGAAGGAGAACGGCCUCCAUCGUCUACAACUCCGGCCACCGUCGCCAUGGCCAAAUUCUCCUUCGCCGGUUCCCUCGUCGAUUAUUUCGUGCAUGCACCAUCCCUGGGAUCUAAUAAACCUCUUGGACAGGCAUGCAUGGCCACUCUUCAAGUAGAUCGAGCCGUCACCGUUCACCCCGGAGGUUCUUGCCGCCGCCGCCAAUUCCGUCCAUCGCCAAGACCCUGUCAGGCCUCUAGAAGCCACGAUGAUUGCUUAAACGGUGAAGAAGUGAAUUAGGUGCUGACAUUUUUCAGUUACAAGGAAAGUCCCACCUCCCUCUCUCUUUGAUCACUUCUCUCUUUGUUCACUUUGAACCUAUGUUUUGGAGGUUAUUGAAAAUGUUUGUAAAUCUUGCAUGUCGAUUGUACACUAAUAAAUUAAAAAAAAAUUUAAACUACAAACUUCUAUUACUUGCAUUAUCACCUUAACCCCACAUAUAUCCAUAUCCCUCAUUCCUAACCUUAUGAAUCAUAUCCUGUUACUACUUGGAAUUUGGAAUAUGAGUUACAUUGUCACUAGUUUACUAUAUUUCUUAGCCAUGCUUAGAAUGGUUUUACUUAUCACUUGGGCUCAUAUUAACAGGAAAAAUAAUUUUGUUAAGAUUCUAGACAGAGAUGAAUAAAUAAAGUAUUUGACAAAUAAAAUGAUGGAAAACAUGGGUUUUAGGUUUGGGCCUCAAGUGGUGCACAUAUGGUGAUUAGUUGUGUACCGAUAGGGGGAGAGUGUGCCCAAACCGACCUAAGGACUGCACUCAAUGUCAGUUCAUUUCGUAUAUAGUACAACCACAUGAGCUAGUAUGGGAUAGCCCAAGCUUAGUAAAUUAUUUAUGGUUUAGCCUUACAUUCUGGUAGGCCGGUGUAUAUGAGUUCGAAUAAUUCACAGGAGCUUGCUAUUUACGCCGAUGUGGUAGUUUAGGUGACUAAGCGUGUCCAAUAUAACGGUAUUGUGCCACGUGGUGGGUUCCCGUUGUGUCCGCUACCACGGCCUUAAGUUUAAGGCGUGGGGCCGCCACUUAACGGUUCUAUGUCAUAUAACAUGUAUGGCUUAGGAUGGAGAGACGUAUCAUGCUGGUGUAAGGCUAAAUCAUUAAUUUUGGAAAAAGCUUUAUUGCGUGUAAUAAAUCGGGUACUUAUGUAUCACAUGUCAUACUCUUGCAUGAUUAUUAUUUCACAUCAUGUGGGUAAAGUGUACAAACUCUGCAGAGUUAAAACUAAUCGAUUAGCCGUCCUCGCGGUCAUGGGCAGCGUGUGGAUAUGUAUUGAGUAUAGACUUGUGUUUAUUCUUCUAAAUGCUGAAAUUUACCUUCAAAUUGUGAUGAGAUUUGAGAAUGAUCUCCUUGCUAAAAAGAACCAUAAUAUGCCUUCCUUGAUUAUAUGCCUUGCAAGUAGAGUGUUAGGCUUGCAUUGGUGCUUGCUAGUACAUUAUAACUGACUCUUACUAUUGGAUUAACUAUUUGCUUGUAGGUGUUAGACUUAGCCUUUUGAGUGAUGCGGGUAAUCGACUGCUUCUUUUAGGAUCUGAACUUAAUGGGGGUAAACCCUAGUCGGUUUGCUUGAGGAUUGGGUAGUCAAGCUUUCGCUGUUCUAAUAUCUAUGUUCGGCCGGUCGGCUUAUGUAAUUAUGAAGUAGUUGUGAUUUAGAUCAAUUUUAUCUUAAAUGUAUUUUGCUAUGUAUUUCCAUGCUUAAGAUGAAAGUGUGAAUCUAGUGCACAUCCUGGGAACUAGAUUCACAUAAGUAUGAGUUAAGAAUAUUUGGGAUGUUGUAGAUCUUUAGCCUUUUUUAUCAAGUCUUCUUAAUGUGUAACACAUCCUUCGAGUGGUUUGACGGGCACAUUUCAGGCUGAAGUUGACUGGCAGGCUAAAGGCCCAGUAAUGUCUUCAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
62.2%
ME_num:
MEP:
25.0%
HE_num:
HEP:
12.6%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.85
Avg Expression:
23.15
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -7.33974793223282 | 1.70479979228918e-117 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -4.97448722800302 | 9.03130813341162e-167 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -13.0885054185283 | 1.28040814321777e-27 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -12.085513186387 | 3.44992265130917e-23 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -12.3367236390116 | 1.30314625715129e-24 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -12.5034554590438 | 2.99074528789854e-25 |
| 7 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | 4.2534431767247 | 0.000314454041470444 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -5.67014637892757 | 8.57010198259747e-191 |
| 9 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.34807098797894 | 0.0416580060911927 |
| 10 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 3.49107517591697 | 1.24916493612262e-06 |
| 11 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 7.90202098038167 | 6.43431644829158e-06 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 1.54769172212064 | 0.0499067815915943 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP2286 | 3.05083392142395 | 1.02117639349738e-05 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 2.39190414207021 | 6.59855616566351e-05 |
| 15 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 6.08120318172637 | 3.33805668478611e-22 |
| 16 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 7.5828469976785 | 8.36714058147907e-05 |
| 17 | 9311 // leaf // control--/--9311 // leaf // salt | 4.48282455056488 | 0.00852295087932541 |
| 18 | Baldo // leaf // control--/--Baldo // leaf // 100 mM NaCl | 4.49502512758516 | 0.00193046887402327 |
| 19 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -12.9023897291108 | 5.5367931758588e-27 |
| 20 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -9.20058862777339 | 1.88282732176238e-82 |
| 21 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 2.34486170843217 | 0.00968749160509398 |
| 22 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 2.3073635278534 | 2.62762648241542e-06 |
| 23 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | 2.2361249912064 | 0.0107754390453574 |
| 24 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 1.59218279215952 | 0.024663206301189 |
| 25 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 1.61283986852493 | 0.0286454666842343 |
| 26 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 6.14856431187974 | 6.88965269414792e-13 |
| 27 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 1.60413148408184 | 0.0111455874602017 |
| 28 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 6.14847345525934 | 7.09535337645657e-13 |
| 29 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 6.14837894691843 | 6.95225157790402e-13 |
| 30 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 9.04590084873412 | 1.06688066259831e-16 |
| 31 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 5.1786907394683 | 0.00120753369705817 |
| 32 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 3.63173459811342 | 0.0324388255732609 |
| 33 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -4.00081285056738 | 0.0398237870423239 |
| 34 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -8.95087525225853 | 1.04470743939816e-62 |
| 35 | 9L136 // leaf // control--/--9L136 // leaf // salt | 5.31806928141497 | 1.62521767712655e-05 |
| 36 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 7.61412144345817 | 1.18438575954071e-30 |
| 37 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -12.5539034477561 | 1.5273259526735e-25 |