Chr:
Chr1
Start:
32934177
End:
32935007
Strand:
+
Ref_name:
LOC9268283
Sequence
(XR_001546593.1):
AUAAAUAUAGCUCCAGGACAGGCUCUCUUCUUACUCUCACCCAGUAUAGUUCUCCAUUGAGCAAACUACCAAAGGGUACUCAUCUGAAACAGAAUCCAGUGAUCGACCAGCAUGGAUGAUCGUAGGUACGGCUACUCGUAUCCACCACCCCAAGGGUACUACAAUGGGCCGCCGGUGAUGGCGCCGCCGCAGUACGCGGCUCCGCCGCCGAGGCGGCCGGAGCCGAGCUUCCUCGAAGGAUGCCUUGCUGCUCUCUGCUGCUGCUGCCUCAUCGACGAGUGCUGCUGCGACCCAUCGGUCAUAUUUGUGACCUAAUUACGGUCACAGUGGCGUCUCGACUGGUUGACGAGGACGAACAGUCUGAGUUGAGAUAUACACUGUACACGUGCUUGCCUUUUGUUAAAUGUUGAUAAUUGUAUCGGUCUAUAGCUAGAUUACAGUACAAGUCCUCCGUUAAGUUCAGGUUCUUCAAGUAUCAGAUGCAUGCGUGAUCCACCUGCAGUGGAAAUAUUUAUAUUGCAUGCACUGGUUGCUCGAUUAACCAAAGGACGUAUACGUUUCUAUGUGUAUGUCUGCAUGAUCGACUAUAAAGAAUAAACGAAGGUAAAGUGAAGUUAUACUGUGCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
2.85%
ME_num:
MEP:
21.75%
HE_num:
HEP:
75.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.81
Avg Expression:
60.04
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 5.08632440704073 | 1.27219582310251e-11 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 4.42466728813128 | 8.47787028670154e-09 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 8.95721942050987 | 1.10033138381092e-41 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 8.19449153144332 | 1.72306548502149e-31 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 9.28469808280484 | 9.82974041078728e-45 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 7.07322058897152 | 9.74947942077637e-25 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | 2.36622660064214 | 0.046324477856845 |
| 8 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | 1.86713811215589 | 6.45679947166483e-07 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 3.83060204872075 | 1.12773945410718e-06 |
| 10 | Taichung 65 // shoot_apical_meristem // 0_days_after_shift--/--Taichung 65 // shoot_apical_meristem // 12_days_after_shift | -1.09341846911092 | 0.0242858458913096 |
| 11 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | -2.63209284969766 | 0.000415911688318212 |
| 12 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -2.62847760797063 | 0.00385354363558773 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 2.73439613682984 | 0.00928971534408667 |
| 14 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | 1.25784733465184 | 0.0280276173477095 |
| 15 | Baldo // leaf // control--/--Baldo // leaf // 100 mM NaCl | 2.19481463315542 | 6.11142993975005e-06 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 6.82509921199134 | 4.46118094731431e-24 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 6.53645474872808 | 8.13081412780884e-22 |
| 18 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -2.06248970703442 | 2.14633706780818e-11 |
| 19 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -3.42480232387621 | 0.000376512744171685 |
| 20 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 4.79300585753393 | 2.19120205355033e-10 |
| 21 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 6.00220446443604 | 1.83949582441379e-18 |