RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC9268254

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr12

Start:

18195103

End:

18201581

Strand:

+

Ref_name:

LOC9268254

Sequence
(XR_001541930.2):

GACCGGUCAGGCUCAAGACUAGUGAGGACUGAGGAGCUGAGGACAGAUACCCAUUCAGCUGCCAGCAGACCCCUCUUCUUCCUCCUCACCCCCUCUCCACUGCCUCCUUCCCCCAGAUUCACCACCAUUAAUCCCCCAAAUCAACCACCAUGGAUUCUCUCCACUAGAAUCUCCGGUCACCCUCCCACCCUAUCUCCGGCAUCAUCGUGCCCUCCACCGCGCCCACUAACUAUCUCCCCUGCCUCUCUAUCCAGAUCUCUCAGUCCAGAUCCAAAGUUGCAGCCUCCACCAGCUCCGGCAACUCCAGCAACCAAAUCCCUGUUCGAGGUUGAAGCUACUGCAUCAAAAUCCCCAAUUACUUCAUUAUUAGGUGGAUGCACCCUAGAUCUACUGAUGCUUUUUGUUUCAAGAGAACAGGAUGCUGCCUGCUUAUACGAGACAUGCAUAGGGAUUAGUGGAUGACACCAGCAAAGGAUGGGUGAAAGGCUAAGGAAUACUAAUGUGAGGUACACCUUAAAUUACAGGAUUAGAAAGGGUUCAGCCAAAGUAUCGGAACUGAUUCCUCCCAUUUAGGCUCACAGCAAGUUGACUGCAAUGGCUACCACAACAAUGAUGGAUGUGAUAUUGCUUCAAGCAAUGGUGGCAGUAACAACAUCGACCAACAAUUGUAUCGGUUGUUUGAAUGCUUCUCCUUGAUGCUGCUACAGCACAUGUCAUGCAAGAUGGGCUAAGGUUUUUGAUAUACCAAUGUGGAGUUGCGGCAUACUAAUGCUUUUGGAUAUUUUGUCUAUAUGGUUCUAACCAUAUAGAUGGAGUGUGAGACUUUGAAAGUACGUGCUAUUAGGUGUCUUAGGCCAUGCAAACUCUAGUUGUUCAACUUGUGUGUUAUGUUGAAAUAGUGAACUAGAACUAUUCUAUGAUGGACUUGAUCUUUCUAUUUUCUGAAUGAAAUAUGGAAUUUGAGCUGUUUAUAUGUUA

Sequence
(XR_001541933.2):

CUUUGACCGGUCAGGCUCAAGACUAGUGAGGACUGAGGAGCUGAGGACAGAUACCCAUUCAGCUGCCAGCAGACCCCUCUUCUUCCUCCUCACCCCCUCUCCACUGCCUCCUUCCCCCAGAUUCACCACCAUUAAUCCCCCAAAUCAACCACCAUGGAUUCUCUCCACUAGAAUCUCCGGUCACCCUCCCACCCUAUCUCCGGCAUCAUCGUGCCCUCCACCGCGCCCACUAACUAUCUCCCCUGCCUCUCUAUCCAGAUCUCUCAGUCCAGAUCCAAAGUUGCAGCCUCCACCAGCUCCGGCAACUCCAGCAACCAAAUCCCUGUUCGAGGUUGAAGCUACUGCAUCAAAAUCCCCAAUUACUUCAUUAUUAGGUGGAUGCACCCUAGAUCUACUGUUUUUUCUGCCAGUAGAUGCUUUUUGUUUCAAGAGAACAGGAUGCUGCCUGCUUAUACGAGACAUGCAUAGGGAUUAGUGGAUGACACCAGCAAAGGAUGGGUGAAAGGCUAAGGAAUACUAAUGUGAGGUACACCUUAAAUUACAGGAUUAGAAAGGGUUCAGCCAAAGUAUCGGAACUGAUUCCUCCCAUUUAGGCUCACAGCAAGUUGACUGCAAUGGCUACCACAACAAUGAUGGAUGUGAUAUUGCUUCAAGCAAUGGUGGCAGUAACAACAUCGACCAACAAUUGUAUCGGUUGUUUGAAUGCUUCUCCUUGAUGCUGCUACAGCACAUGUCAUGCAAGAUGGGCUAAGGUUUUUGAUAUACCAAUGUGGAGUUGCGGCAUACUAAUGCUUUUGGAUAUUUUGUCUAUAUGGUUCUAACCAUAUAGAUGGAGUGUGAGACUUUGAAAGUACGUGCUAUUAGGUGUCUUAGGCCAUGCAAACUCUAGUUGUUCAACUUGUGUGUUAUGUUGAAAUAGUGAACUAGAACUAUUCUAUGAUGGACUUGAUCUUUCUAUUUUCUGAAUGAAAUAUGGAAUUUGAGCUGUUUAUAUGUUA

Sequence
(XR_003239862.1):

CCGGUCAGGCUCAAGACUAGUGAGGACUGAGGAGCUGAGGACAGAUACCCAUUCAGCUGCCAGCAGACCCCUCUUCUUCCUCCUCACCCCCUCUCCACUGCCUCCUUCCCCCAGAUUCACCACCAUUAAUCCCCCAAAUCAACCACCAUGGAUUCUCUCCACUAGAAUCUCCGGUCACCCUCCCACCCUAUCUCCGGCAUCAUCGUGCCCUCCACCGCGCCCACUAACUAUCUCCCCUGCCUCUCUAUCCAGAUCUCUCAGUCCAGAUCCAAAGUUGCAGCCUCCACCAGCUCCGGCAACUCCAGCAACCAAAUCCCUGUUCGAGGUUGAAGCUACUGCAUCAAAAUCCCCAAUUACUUCAUUAUUAGGUGGAUGCACCCUAGAUCUACUGAUGCUUUUUGUUUCAAGAGAACAGGAUGCUGCCUGCUUAUACGAGACAUGCAUAGGGAUUAGUGGAUGACACCAGCAAAGGAUGGGUGAAAGGCUAAGGAAUACUAAUGUGAGGGAACUGAUUCCUCCCAUUUAGGCUCACAGCAAGUUGACUGCAAUGGCUACCACAACAAUGAUGGAUGUGAUAUUGCUUCAAGCAAUGGUGGCAGUAACAACAUCGACCAACAAUUGUAUCGGUUGUUUGAAUGCUUCUCCUUGAUGCUGCUACAGCACAUGUCAUGCAAGAUGGGCUAAGGUUUUUGAUAUACCAAUGUGGAGUUGCGGCAUACUAAUGCUUUUGGAUAUUUUGUCUAUAUGGUUCUAACCAUAUAGAUGGAGUGUGAGACUUUGAAAGUACGUGCUAUUAGGUGUCUUAGGCCAUGCAAACUCUAGUUGUUCAACUUGUGUGUUAUGUUGAAAUAGUGAACUAGAACUAUUCUAUGAUGGACUUGAUCUUUCUAUUUUCUGAAUGAAAUAUGGAAUUUGAGCUGUUUAUAUGUUA

Sequence
(XR_003239863.1):

CUUUGACCGGUCAGGCUCAAGACUAGUGAGGACUGAGGAGCUGAGGACAGAUACCCAUUCAGCUGCCAGCAGACCCCUCUUCUUCCUCCUCACCCCCUCUCCACUGCCUCCUUCCCCCAGAUUCACCACCAUUAAUCCCCCAAAUCAACCACCAUGGAUUCUCUCCACUAGAAUCUCCGGUCACCCUCCCACCCUAUCUCCGGCAUCAUCGUGCCCUCCACCGCGCCCACUAACUAUCUCCCCUGCCUCUCUAUCCAGAUCUCUCAGUCCAGAUCCAAAGUUGCAGCCUCCACCAGCUCCGGCAACUCCAGCAACCAAAUCCCUGUUCGAGGUUGAAGCUACUGCAUCAAAAUCCCCAAUUACUUCAUUAUUAGGUGGAUGCACCCUAGAUCUACUGAUGCUUUUUGUUUCAAGAGAACAGGAUGCUGCCUGCUUAUACGAGACAUGCAUAGGGAUUAGUGGAUGACACCAGCAAAGGAUGGGUGAAAGGCUAAGGAAUACUAAUGUGAGGUACACCUUAAAUUACAGGAUUAGAAAGGGUUCAGCCAAAGUAUCGUAAGCUUUUUUUGUGUCCACCUCUUGCGGUCCUUAAUAGAUCUUUGGGAACUGAUUCCUCCCAUUUAGGCUCACAGCAAGUUGACUGCAAUGGCUACCACAACAAUGAUGGAUGUGAUAUUGCUUCAAGCAAUGGUGGCAGUAACAACAUCGACCAACAAUUGUAUCGGUUGUUUGAAUGCUUCUCCUUGAUGCUGCUACAGCACAUGUCAUGCAAGAUGGGCUAAGGUUUUUGAUAUACCAAUGUGGAGUUGCGGCAUACUAAUGCUUUUGGAUAUUUUGUCUAUAUGGUUCUAACCAUAUAGAUGGAGUGUGAGACUUUGAAAGUACGUGCUAUUAGGUGUCUUAGGCCAUGCAAACUCUAGUUGUUCAACUUGUGUGUUAUGUUGAAAUAGUGAACUAGAACUAUUCUAUGAUGGACUUGAUCUUUCUAUUUUCUGAAUGAAAUAUGGAAUUUGAGCUGUUUAUAUGUUA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

101

LEP:

20.53%

ME_num:

183

MEP:

37.2%

HE_num:

207

HEP:

42.07%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot_apical_meristem

Tau :

0.78

Avg Expression:

54.52

Tip: OSA-LNC9268254 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN5.118827067302378.63468754915083e-06
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN5.35294772826397.6575508293251e-07
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA4.788569296376560.000267742844429831
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN4.882324627781472.49905677275927e-05
5Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA5.060802279891351.03763866564453e-05
6Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA6.128702216957465.00037578699171e-09
7WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h5.539888580259860.00945506646728368
8Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min"1.810061480639980.0162212112164904
9Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA6.146685809832693.18162116766723e-09
10Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN5.210816654337691.29084029700332e-06
11Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP73422.392135298354830.00628899289601149
12Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated4.335233666909390.0115113529951144
13Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA6.619405214507852.13929298402269e-10
149L136 // leaf // control--/--9L136 // leaf // salt-1.598292545114840.00251435780720541
15Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA6.333832197517825.66956862432333e-10