Chr:
Chr7
Start:
66649
End:
67918
Strand:
-
Ref_name:
LOC9268212
Sequence
(XR_001547797.2):
AUGAAAUAUGAAAUAUCUUAUGCUAAGAAGAGAAAAUUCGGAAAACAGGAGUGCGCUCUGAAAAGCGUAAAAUGAGGGGUCUUUUUGCGAAACCAAACAUCCCUGCAGGCUCCACCUCCCCCAAACCCUAGCCGCCACUCGACCGCUGUUCCCCUCUUGCUCUCUCCCUUGCCCUCACGGCGGCGGCGGCAGGCCAUCGCUCGCUUUUCUCCACCAUCGACGACCAGUCCCCUUUCUCCUCCAUCGCCCCUCUCGUGCAGAUCGGAAAUGAUUUCUCCUCAUCCCGAUUUGACCUCUGGUUCGACCGAUAUGAAGCAGGCGGCGGCCGCGCCCGCGAAGAGCACCAGUUCGUGCGAGGAUGCGUCGGUGGCCAAGAGAGAUCAAGGAGGAGAUAGCUGGCGGUCACUGCGGCGGAGGGAAUCUGCCUGGAACUUGUUCGUUCUUGAUGUCAUUCUCAAGAGCACUGCAUCUAGGCAGUGGAUUUUGCUUGGAUUCGCUUGUGCUUUGACGCCGGUCUGAUGGUAUUUGGUUAAAAAAUGCCAGGUCUACUUUCUUCCCUUUCCCUUACCUCAAAUGAUUCUCUUAUGGUUUGUGGCUGGAAUGGAGCAAUCGAUUUGGUAAAAAAUGUCAGUUAGUGCAAGCUACAAGACUUGGCCUUGUGCUGCUGGAGCAGAGGUUGGCUGCCUACCACUGCUGUGUUGUGUGCUGCGACAUUUAAUCACCAAACAAGUACUAAUAAUCUACUGAUUUAUCUUAUGUUAAAUGGCAGGAACUCCUAUUAUCUAUCCUACUGUUUUUUGGGUUGCACAAUUGGAACUGUCAGAUUUUUUUUGGGUUGCACAAUUGGAACUAUCAAAGAUGGGAGGAUGUGUUGGUUGAUGUUCUAAUGCUAUCUGAUCAUCUUCUUCUCCAAUGAGAAAAAAAAAUGAAGCUGGCACUGCAACUCCUGCAAUAUAAAUCUGGGCAACCAUUCAGCCUUCAUAUAUCAUAAUGUGUUCCCAGAUUUCGAAUGAUAUGUUACACAUGAACUGAUUAGGAUGGCUAGGAGAAAUUUGGUUCUUUCUCCAGAUGAUGCAGUAACGAUAUAAUGACCUGAUAAGCAUGUACUUAUACAACAGCUAAGCAGAAAAUUGUAUUUCAUUGUUCAUAACAACUGAUUUGGCAAGCAUUUUGUGGACCUAAC
Sequence
(XR_001547798.2):
AAAUAUGAAAUAUCUUAUGCUAAGAAGAGAAAAUUCGGAAAACAGGAGUGCGCUCUGAAAAGCGUAAAAUGAGGGGUCUUUUUGCGAAACCAAACAUCCCUGCAGGCUCCACCUCCCCCAAACCCUAGCCGCCACUCGACCGCUGUUCCCCUCUUGCUCUCUCCCUUGCCCUCACGGCGGCGGCGGCAGGCCAUCGCUCGCUUUUCUCCACCAUCGACGACCAGUCCCCUUUCUCCUCCAUCGCCCCUCUCGUGCAGAUCGGAAAUGAUUUCUCCUCAUCCCGAUUUGACCUCUGGUUCGACCGAUAUGAAGCAGGCGGCGGCCGCGCCCGCGAAGAGCACCAGUUCGUGCGAGGAUGCGUCGGUGGCCAAGAGAGAUCAAGGAGGAGAUAGCUGGCGGUCACUGCGGCGGAGGGAAUCUGCCUGGAACUUGUUCGUUCUUGAUGUCAUUCUCAAGAGCACUGCAUCUAGGCAGUGGAUUUUGCUUGGAUUCGCUUGUGCUUUGACGCCGGUCUGAUGGUAUUUGGUUAAAAAAUGCCAGGUCUACUUUCUUCCCUUUCCCUUACCUCAAAUGAUUCUCUUAUGGUUUGUGGCUGGAAUGGAGCAAUCGAUUUGGUAAAAAAUGUCAGUUAGUGCAAGCUACAAGACUUGGCCUUGUGCUGCUGGAGCAGAGGAACUCCUAUUAUCUAUCCUACUGUUUUUUGGGUUGCACAAUUGGAACUGUCAGAUUUUUUUUGGGUUGCACAAUUGGAACUAUCAAAGAUGGGAGGAUGUGUUGGUUGAUGUUCUAAUGCUAUCUGAUCAUCUUCUUCUCCAAUGAGAAAAAAAAAUGAAGCUGGCACUGCAACUCCUGCAAUAUAAAUCUGGGCAACCAUUCAGCCUUCAUAUAUCAUAAUGUGUUCCCAGAUUUCGAAUGAUAUGUUACACAUGAACUGAUUAGGAUGGCUAGGAGAAAUUUGGUUCUUUCUCCAGAUGAUGCAGUAACGAUAUAAUGACCUGAUAAGCAUGUACUUAUACAACAGCUAAGCAGAAAAUUGUAUUUCAUUGUUCAUAACAACUGAUUUGGCAAGCAUUUUGUGGACCUAAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
0.41%
ME_num:
MEP:
5.69%
HE_num:
HEP:
93.7%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.51
Avg Expression:
21.62
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.09838583550146 | 3.57823592974462e-07 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.24189247448502 | 2.57099625852437e-08 |
| 3 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | -1.30002368987593 | 0.000402774385558857 |
| 4 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.00543131687249 | 0.00933326090406078 |
| 5 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.00550950528311 | 0.00957246650399303 |
| 6 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.00561078673094 | 0.00935977934674099 |