Chr:
Chr1
Start:
21447484
End:
21450116
Strand:
-
Ref_name:
LOC9267960
Sequence
(XR_001544343.2):
AGGCGGUAACCCCACCACCACCCUCAUCUCCGUCACUCUCCCAUGAUGGGUAUCACCCCUCCUCUGCUCCGACAACCGGCGGCUCUCCUCCCCAGGCCGGCGACGCGGAUCUGGUGGUACGGGACGACCACGGAGCGGCCGGCGAGCUCCAGGCGGCGCGGCGGCGAUAGCAGCUCGACGGCGUCGCCCUCCCUAUCCCCCACACCUCCGUCGCCUCUGCCCCCUCACCACCGGGUCACUCCCUCACCACCGGAUCUCGCCACUGGAUCCCGUCGCCGACGGAGAUCUCGCCGUCGGAUCCUGCCACCGACCUUCUUAAGUGGUGGUGGUGGAGGGGGGGAGGGUGGAUUGGGGCUCGUCGCCUCGAGGAGGCCGACGGCGAUGUGGCUUUACGGCGAGGGUCGACCCACCGCCUGUUCUUCAACUGCUUCCGAUGCCCUCCAUAUAUCUCAGUGAGUUGAUUCGCCGAGGAAGAUGGCGAUUCGCCGGAUCCCUUCAUCCUGCCAAUCUUCAUUUUUUUUCCAGUAUACAGUGCUUCCUACAUGAUCAAUAUCUCAAAUCUCAAUGAAGAUAGGCAGAUUGUUAUUCCAGGUUGGUUCUCUGGAUGUGUGGAAGUUUGCAAUUUGCAGAUCAAUGGCUGUAUAUGGUUGAUAUAAAUUUGAAGAUCACUGGCUCUAUAUGGUUGAUAACUUGAUAUGAGGGUAAUUGGGAAAUCUGUGAUAAGCACAUCUCAAGAAGCUAUGUAUAAGUUGUAGCGAAAAAUUCCAUUUGCACAUCAACAAGAAGGCCUUGCUGUAAUUCAAUCCUCUAUUUGCUAUGAGUGGAGGACGAGAAGCAAGGAGUGAUUCCAUUCAAUGUUUGAAAGAUUUGUUUUGUUUUCUGUUUUCAGAUUUCCUGUUAUUAGGUUGAAUCUGAGAUGAAAUAUUGUUUGAAUUCUGUUGUAUUCUGAUUGUAUCUGUUAUUAGUUGAAUCUGAGAUGGUACAUGUAAUUAGGUUUGAAUCUGAAAUGGUAUGAGAAAUUGGAUUGAAUUUGGUGGGCUCAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
9.15%
ME_num:
MEP:
10.98%
HE_num:
HEP:
79.67%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.52
Avg Expression:
27.49
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.13149333165042 | 8.05190142328864e-08 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.26477357352281 | 2.99657330235381e-10 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.36863256037524 | 1.84882954149347e-11 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.48577349889259 | 1.1561383241685e-12 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.01906990291194 | 3.54300099318593e-06 |