Chr:
Chr5
Start:
8578927
End:
8580202
Strand:
-
Ref_name:
LOC9267948
Sequence
(XR_001545835.2):
CAACCCAAAUCGCGGCAUCUACCCUAACUCAAGUCUCUAACCGGCUAACCCUAGAGAGGAGAGAGACAGACAGACGCAAACGCGAGCCGGCGGCGGAGCGGCGGCUGUGGUGCAUCCAGAUCGCGGCAUCGCGCGCCCCCGCGCCCACCGCCCGCGCCACCGCUCGCCACCUGGUCCGCCGUCCUAUCCUCGCCCCCACCAUCUCGCGCCGCCCUCGCUCUUCGCCGUUUCGCCGCUGGCCGCCGCCACCAUCUCGCACCUCCGCCGGCCUGCUCGGUCCCCGUUAUCUCACGACGCCGUCCCGCCACGUCUCGCCGUUUCACCGCCGCCACCACCACCGACGACGACGCGACAGCCACCACCACCGAUGACACCUCAAGCCCCACUGGCGACUCUUCCUCACCGCCACCAACGCCGACGACUCCUCGCCUCGCAGUAGCCAGCAGCCCAGCGGCAGCAACUGAGCAACCAGCAGAUUUGUGAUGGAAUCAUCAAAUGCAAGUAGCAGCAGUGCAAGUGUAUGCAAUGCGGGCAUUGUAGCUUUGCCAGCAUCACAACCAACCCUUGCAAAUGUAGGAGAUCCUACCACAAAUGUGGGUGCAGUGGCAAGAGUAGAAGUUGCUGUUCUGUGAUGAUUGAUGAACUAAGUAUUGAUGGACUGAUGUUCUGUUGUUGUUCUCAAACCCAUUUCCUGGAGAGAUAGGCUGAUAGCAGUAUAGCACCUGAAUUGUGUAUACCUUAUACCAUUGUGUUUUGCUGUAUUCUUUUAGAAUAUUUGUUAUGCAAAUUAUAUGAAGUUAUAGAAGAAUAUAUUUUGCUGUUGAUACUAAACAAUUAGUCUUGAUAUAAUUGUGUUUUAUGAUGAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
12.2%
ME_num:
MEP:
6.91%
HE_num:
HEP:
80.69%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.63
Avg Expression:
30.99
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.03122809786333 | 0.00599097549479238 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.26205754144061 | 2.75848484267631e-08 |
| 3 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | -7.64879646866246 | 0.000104978089478671 |
| 4 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | -7.72377233307918 | 0.000134924773268508 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.00378855979905 | 2.10903361010066e-09 |
| 6 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 1.2503266494078 | 0.00215151208836927 |
| 7 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 1.25023698020697 | 0.00222748530701906 |
| 8 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 1.25015285290672 | 0.00216666571870205 |
| 9 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.32982274476391 | 3.49922153161864e-10 |
| 10 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.16478893432062 | 7.63757161859676e-31 |
| 11 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.24554255691313 | 0.00129412566449761 |
| 12 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.29543319798251 | 6.42063564213906e-07 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.08284579003702 | 1.43516956254373e-05 |