Chr:
Chr5
Start:
13708956
End:
13711862
Strand:
-
Ref_name:
LOC9267914
Sequence
(XR_001545978.2):
CUAACCCUCAUCCACUCUCAUUUCUUUCCCUCUGCAUUCCCCACACCCGCGGCGGCGGCGGCGGCGGCAUCUCGCUUCCGCGGCCGGUAGCCCUGAUCGGCGUCGGCACCUCUCUAGGCGUCGGCGGCAGGCUUCCCCACCCCGAAAGCAGCCGCGACGGUACUCCCGCACCACCUCCCGCCUUUCUGCUGCCUCGCAUCGCCUCCCGCCGCCGCUACAUCCUCCGUCCACUCGCUGCUUCAUCUGAUGUUGCCUCCCAUAAUCCACAGCAGCGCUCCAUAUGGUGGUGCAGCGCUUGAUCCGGAGCAGCUCCGAUGCUGGACACGAUGGCCAGGAGCAACUCAGCCCAUUUCGACAUUUUCCCCAAUUCUCCUCCCCAUCUAACCCUAAUCACCUAAUACCCAAACCCUAGACACGGGAGCCGAGCAAGAGGAGGCGUACGGGUGCGGCGGCGGCGAGCCGCCGAGCCGGCGACUGCGGCGCUGGCGCGGCCGCACGACUCGUCGGCGCAGGGCUGCAGGGUCCCCCAGGAGCAGGUCCGCGGUUGGGCCGGAGAGCGUGGCUGCGUGGCGUUUGACGGCGACGGCCCGUACACGGGCGUGUCGGACGGGAGGGUGCUCAAGUGGAUUCCCCUGGAGUGCCGAUGGGUCGAGCACUCAUCCGCCAGCCACAACAGUUGCUAGGCUCCUCCCCAUCACCCUCGGGCAGGUGUUUCAGAGGAUCGAUGUUGUUAGCAAGGACUUCGGCAACAUCGUCGAUGUCGAGCUCGGCGGGCCAUGGCUGCUGCUGCCAGUGGAGGUGAUGGCAACACUGGCUCACAAGUUUGGGAUCAUCGGUGAAGUUGGUUUCUGUGUUCAAUGUUAAUGUUGAUGUUGGGGCUAUUUGUAAUGAAGUUGGUAUCUGUGUUCAAUGUUUAUGUUGGUCCUAUUUGUAAUGUGUGCAAAGUUCUAAUUGUUGCUCCAAAUGGGCCAAUGCUAAAAAUUUUCUAGAACUAAUAGUGGACUGGGCCACAACUAGAUGUAAAAUGUGUGGCCAAAUGGGUUGGGCCAGAACAAAUGAGUGGACCUGAAUCCUUAAUGUGUUUGACACGUGUCAUCAAAACAUAUUAACACGUGGCUGUAUCAGGUAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
0
LEP:
0.0%
ME_num:
MEP:
0.2%
HE_num:
HEP:
99.59%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.53
Avg Expression:
61.83
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.38490923845376 | 6.81082835250897e-22 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.46253879525652 | 8.62063787758434e-13 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.48806225193628 | 1.29054522502725e-17 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.82005646038489 | 3.20719019972056e-22 |
| 5 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 1.08015866337195 | 0.013687875337779 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.06544722114883 | 1.27306109550853e-37 |
| 7 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.20951096529417 | 0.00065257497169469 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.08441277070888 | 5.96198270652999e-17 |