Chr:
Chr5
Start:
12059213
End:
12062680
Strand:
+
Ref_name:
LOC9267909
Sequence
(XR_001545900.2):
CCUCCUCCAAGCUGCAUCGCCACGCCCCAUUAUCCAUUCCUAAACCGAAGAAACCAACCGAAGAAACCGAGAAGGAGAGCUCCAUCUCCCUUUUCCUUCUCAACCUCGCCGCCGACCGUGAAGACGACGACCGCCUCCAGCGCCAUUACGCUGCGGUCGUUUCCUCUUAUCUUGUGUUCCAUUAUCACCUCUCCACGCCGACUCCAUCCCUCUAAGUUUCAUCCCCUUUCAUGCAGUGGUUUGGUGGGAACGCAAACCUCGCCGACGAUACUCUGGAGCACGCACCGGGUGCCGCCGUGGCGGCAUCGUCGCCGUUGCCAUCGAUCUAGACCAAGCCGGAGCGAGCCACCACGCCACCAGCUUCACCUCGAGCGCCUCUCCAUUUACCCCCAAGAAACCCAUCCAAUGGCGCAGCGAUCUUGGAGAUCGACAUCGUCUUCUCCAACUCCGUUCAACCGCUUCCAUCAUCGAAUCCAUUCUCUCUGACCGAGCAGCCGACGUCAUCCCUGGAGUUGUGCCAUGCCGCCAUGGAGCUUCGCCGUCACUGUGGCUCUGCAGACACCCCCAGCCUUGUCUAGCAUCUCGACUAUAUGAUGUGACCAUGGCUACCACGGAUGCAACCAUUGCUCACAUCAUGGAUGAACA
Sequence
(XR_001545901.2):
CCUCCUCCAAGCUGCAUCGCCACGCCCCAUUAUCCAUUCCUAAACCGAAGAAACCAACCGAAGAAACCGAGAAGGAGAGCUCCAUCUCCCUUUUCCUUCUCAACCUCGCCGCCGACCGUGAAGACGACGACCGCCUCCAGCGCCAUUACGCUGCGGUCGUUUCCUCUUAUCUUGUGUUCCAUUAUCACCUCUCCACGCCGACUCCAUCCCUCUAAGUUUCAUCCCCUUUCAUGCAGUGGUUUGGUGGGAACGCAAACCUCGCCGACGAUACUCUGGAGCACGCACCGGGUGCCGCCGUGGCGGCAUCGUCGCCGUUGCCAUCGAUCUAGACCAAGCCGGAGCGAGCCACCACGCCACCAGCUUCACCUCGAGCGCCUCUCCAUUUACCCCCAAGAAACCCAUCCAAUGGCGCAGCGAUCUUGGAGAUCGACAUCGUCUUCUCCAACUCCGUUCAACCGCUUCCAUCAUCGAAUCCAUUCUCUCUGACCGAGCAGCCGACGUCAUCCCUGGAGUUGUGCCAUGCCGCCAUGGAGCUUCGCCGUCACUGUGGCUCUGCAGACACCCCCAGCCUUGUCUAGCAUCUCGGAAUAGGGUUGAUCUGCACCGGCAAGAUCAACAACCUACGGAGAGGUGUAUCGAUCGCUAAGGCGCAACACAACGUCUCGUACGGUUGUAGUCGGAUCGUCAACGUUUCUCCCAAAUCGUAGUUAUCACAACUCACCGAAAGAUCGGGCCAACAACAGCCUUGAGUGUUGAGAGGAACUCAGGGUUCAUCAGGUGGUAUCAGAGCUUUCGUUGCUCGGUGAGUUUUUAUCUUCCUAUAACCAGAAAAUAGCCAUACAAAAAAAUUCGUAUCAUUUACCUAGCCAUAUUGUGCCAUUGCAUUGUUCUUUUCAGUUUUUGCUUUGUUGAAUUUUGUGUUGCAUCGUCACGUCGUGUUGCUGGUCUUAGCGUCUAGUUCGUUUAGAGUUUCGAGUUCUGGUCACGUUUUGUACCACAGUCGUCGCUGCCACCGUGUCUCUGUUGUUGUCGGGACCUACGAAAAUGGAAUCGGCUCGCUGCCACGGUUCUAUUUUUGUAGUUUUCAGAAGUUUCUAUCGGUUAGUUUUGGAGUUCUUGAGUUGUAUCUAGAGUUUGCCGAUCCUUGUGUGUGUUUGUUUUGGCCGUGCCUGUGUCGUGCACGAGAGGAGGAAGGUGAAUUACCAUAUCUGAUUUUGGAAGUAGUCAAGUUUGUUUUGGAAAGAUAUAGUAGAUUGGAUUGGUUAAAAAUCAGUUUCCUUUUUAUCCCAUACACCAAAUUCGGCUGCCAUCCACUCCACCUCCUGGCCGAGUCCCACUCGCCCCUUUGGCCGAGUCCGACUCCCUCCCUCUCUUCCACCGUUCCGAGUUGUGUCAAACACCUUGGCGAAUUUUUGUUUGGUGUCGGUUUCGAGAUCUGUUUGGAAAAACGGAACCGGCAUAAAUUCAGCAUUCUAUUUUUUGUAUAAUUUUAAUUUUGGGUUUAGACUUUUACAUUUGAGUCCCUAUAAAUUUUAUAUUUAUGUUUGAGUCCCUGUAAUCUUACAUUAAGGUCCUUGAGUCAGUUUUUGUUAAAAAAAAUAAGAAAAAAAAGUGAGAAAAAAAAAGGCAGAAAGGUGC
Sequence
(XR_003242253.1):
UCCUCCUCCAAGCUGCAUCGCCACGCCCCAUUAUCCAUUCCUAAACCGAAGAAACCAACCGAAGAAACCGAGAAGGAGAGCUCCAUCUCCCUUUUCCUUCUCAACCUCGCCGCCGACCGUGAAGACGACGACCGCCUCCAGCGCCAUUACGCUGCGUGGUUUGGUGGGAACGCAAACCUCGCCGACGAUACUCUGGAGCACGCACCGGGUGCCGCCGUGGCGGCAUCGUCGCCGUUGCCAUCGAUCUAGACCAAGCCGGAGCGAGCCACCACGCCACCAGCUUCACCUCGAGCGCCUCUCCAUUUACCCCCAAGAAACCCAUCCAAUGGCGCAGCGAUCUUGGAGAUCGACAUCGUCUUCUCCAACUCCGUUCAACCGCUUCCAUCAUCGAAUCCAUUCUCUCUGACCGAGCAGCCGACGUCAUCCCUGGAGUUGUGCCAUGCCGCCAUGGAGCUUCGCCGUCACUGUGGCUCUGCAGACACCCCCAGCCUUGUCUAGCAUCUCGACUAUAUGAUGUGACCAUGGCUACCACGGAUGCAACCAUUGCUCACAUCAUGGAUGAACA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
66.06%
ME_num:
MEP:
25.41%
HE_num:
HEP:
8.33%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.85
Avg Expression:
10.37
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -7.42569728251587 | 1.3964558108053e-27 |
| 2 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -6.12624757986917 | 0.00112705064182534 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -4.8910726526535 | 6.5970899328289e-55 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -7.18756487148487 | 1.78363043895949e-35 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -8.89136426730303 | 6.40581712560351e-13 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -5.6604307337448 | 3.55800318046069e-34 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -10.2671580045055 | 3.38141765904532e-17 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -6.78860673871311 | 4.89919115269532e-43 |
| 9 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 3.55630434193831 | 0.0108847921435424 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -8.32046966951627 | 5.37826232685802e-22 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -7.9627680414999 | 4.00269511976919e-32 |
| 12 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 4.38421521915288 | 0.000553971879184162 |
| 13 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 4.36659559085549 | 0.000602153157661048 |
| 14 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 4.3665840249608 | 0.000598590183756768 |
| 15 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 6.30289399399083 | 2.31716945586803e-14 |
| 16 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 2.09666957439533 | 0.00050945844298982 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -9.59611971174097 | 4.11252188270016e-15 |
| 18 | 9L136 // leaf // control--/--9L136 // leaf // salt | 4.8196358597968 | 5.15915106829175e-20 |
| 19 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 6.15844973218663 | 1.50425970893036e-19 |
| 20 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -10.3162855465405 | 1.46309006979169e-17 |