Chr:
Chr3
Start:
17452140
End:
17454940
Strand:
-
Ref_name:
LOC9267848
Sequence
(XR_001544764.2):
UGAAAGUUCUGGUAUCCUUAUGCUCCUUUUUGCAUUACAGAGAAACUCAUUUUUAAAUAAGCCUUUGCUUAUGAUACAUAUUAAUGUUAGUGCAUGCUCAGUAGACAGCUGUAUCAAACUCCUUGCUUUGGUCCCAAAGCAAUUGCCAGUGAGUGAUAAAAAGAAAGCCAAAGGCUAGAGAAGAGGUUGAUGCUGAACUUAGAGGUGCCUCCUUUACUCUUAAUCGAAAGGUUAGGAGAAGUAUACAGAAAGAAACACUAUCUGCUCUUUUCGAGACUUACCUUCGUAUUUUGAAGCAUAGGAUGUAUACUUCAAAUUCCAGGACUUCAGGAGCAAGGCCAUUAAUGUAUCCCCAGAUGGAGGGAUUAGGAAAAUUCUCACAUUUAAUUGAUUUGGAUUUCAUGGGCGAACUUACCGCAUGUCUCAAGAAGCUUUCUGGGUAUACCGACCAUCACAGUGAGAUUCUACAUGAUAAUACACUGUCUACAUCACAACAUCUGCAAUGCUGCAUAAUUGUGUUUAAUGUCGGGAGGAGCAACCUUGAAGCUCUGAAUGUCGACCUGGAAGACUUCUUUCUGCAGCUUUUUAACCACAUAUUGGGAGUAUCGGCCUGACAGAUUGGAAUUCUAUUGAUUUGGGUCUGGUGAAAAGAAAUAUAUGCUCUUGACCUCGUGUUCUUUCUUUUGUUGACUUGCCUCCAAUUGAUUCUAUAGAACUUGUGAUGUUACUGCAUUUUCCUCCCUUAAAGAAAGAUUUUUCGAUAGGUAGCAUCAUAGCAAAAACUUCUUCCAUUAUAUUUUGCUUGUAUUAGUUUUCUUGUUCACUGUUUUACCCUUGAAAUGCUUAUCGUUACUCAAAUAACUAAUUAUAUACAGUUAUUUCACAUAUUCACAUUACACGAUGAUUUCUGACAAUGCAUUUUGUCAUGUACUCCAAUGCUGAUUGAUUUAAAAUAGAAAGUUGUAUAGUCUUGAGUUAGCACUAUUCUGUUAAUGUGGAGGCAGCAGUGCCCAAUACAAUAUGUUUAAUUCAGGGCUUAUGGCUAUUCACUUUGUCUUCCAUCAACAAAGUGAUUUCGGAAUGUUUUUCAUGUCUGAUCAUUUUUGGUAAAUUGAAUGGUUUUUAUGUCUAAAAUAGCAGUAGCGAAGGUUUCAGGUAACUUAACAACAAAACCUGAUUUUUGUCUUUAUCCAGCGAUUGUGGUGAAGUAUUGGCUGAUGCUCUGAAGACACUUCUCUGAGAAGGCAAACCGCAGGAUAUGAUAAGAGCAGCUGCUUUCAUUAAACGCCUAGCUACCUUUGCUGUCCUUUGGUUCUCCAGAAGCCAUAGCAGGUUUGAGUUUCUUUUGUCUUGCACUGUUCCAUCUGGUUGAGCUAAUAAUUGCCAGAUUUUUCAUGUUUGACUUGUGGUCAGUAUGAGCAGUGAUGCACAUUCUGAACGGGCACUCAUGUGCAGAGCAUUGGUGGAAUAAUUCAUAAUAUAAUGCAAUAAAUCACCAUUAUAUGAGCCCUACUUGUAUGUAGUUCGUAUAGGUUGCUCAAGGUUGACCCAGUGUCCUUAGGUAGAGUAGCUCAUCAGGAUCGAUAUGUAAUGUGUAUGACAGUAGAACAAGUUUUUCUGCCUUGAUUGUAGUCCAAAUACUAUAGAUCCAUUGUAACCUAGUCACAAUUUUGGCAUACCCACUUUGUAACCUAGUUUCGUAGAGUUUGGCGUCUAUUACAAAGCCUUGCUAGUCAUGAUUUUGUGGACAAUUUACGGUCGUUUAAUAGUUAUUUCGUAAUCUGUCUUCAUAGUUUUCUUGUGUGCAACCAGGCUAACAAAUUUGUUGCCGCUCUGCGAGAUAUAGCAGUGGCAGGCUUCUGCUAUUUGUUUCUUGUUAGACAUGGUCGCAUGGACAAUGCCAUCCCCUGUGCGAAACUACAAAUUGGUAGUCGUAAAGUGCUAGACUGCCCGAGCAGAAGAAAGAAAGAAAAAACAGCAGUUUUUAUCGUCUAUUUUUUAUCAUCGUGCUCAUUGAGGCUAACGCGAACUGCAUAAUGAUAUUAACAUAUCAAUCGAGAUGCAUAUGACAUUUCUUCUGAACAUGCUCUGCUAUUCUCACAAUUUGGUAAAUUUGCUUGGACCCUCGUUCCGUUGCACGCACGGAAACAGGGUGUUUAUCAGAAGUUACAAACACAAGUUACAGGUUUUCAACAGGUAAAGAAUGUGAAGAAAAACCUCCCUAGGUUGUGAUUACAAGAACACCGAUGGCGAGGGAUUGACGACGAUAUGCCUAAGCGGAUUUGAGACGUCUCCCCCUCCAGCGUGCUUCACAAACUCUGCAGGACUAUGGAAUUUACCAUGGCAGACACACAUUAUACUCACAUCCUCACCUUUCCUGUACUUGUACAGGAAGCCAUCUAUCUUCCUACCAUUGGGCCCUUCCACCUUGGAAGACACCAUUGGCAUGUCCAUCAUGAUCUUCCCGAUGUCGCCAGUGCUGCUCGUCCGCAUUGUCAGUGACCCAAGCGUUCGCAACGGGGACUGCUGUGUCACGGUGCCGUUUAGCGGCUUGCCAGUUGAU
Sequence
(XR_001544765.2):
UGAAAGUUCUGGUAUCCUUAUGCUCCUUUUUGCAUUACAGAGAAACUCAUUUUUAAAUAAGCCUUUGCUUAUGAUACAUAUUAAUGUUAGUGCAUGCUCAGUAGACAGCUGUAUCAAACUCCUUGCUUUGGUCCCAAAGCAAUUGCCAGUGAGUGAUAAAAAGAAAGCCAAAGGCUAGAGAAGAGGUUGAUGCUGAACUUAGAGGUGCCUCCUUUACUCUUAAUCGAAAGGUUAGGAGAAGUAUACAGAAAGAAACACUAUCUGCUCUUUUCGAGACUUACCUUCGUAUUUUGAAGCAUAGGAUGUAUACUUCAAAUUCCAGUCUAAUUAUCAUCAUCAGGACUUCAGGAGCAAGGCCAUUAAUGUAUCCCCAGAUGGAGGGAUUAGGAAAAUUCUCACAUUUAAUUGAUUUGGAUUUCAUGGGCGAACUUACCGCAUGUCUCAAGAAGCUUUCUGGGUAUACCGACCAUCACAGUGAGAUUCUACAUGAUAAUACACUGUCUACAUCACAACAUCUGCAAUGCUGCAUAAUUGUGUUUAAUGUCGGGAGGAGCAACCUUGAAGCUCUGAAUGUCGACCUGGAAGACUUCUUUCUGCAGCUUUUUAACCACAUAUUGGGAGUAUCGGCCUGACAGAUUGGAAUUCUAUUGAUUUGGGUCUGGUGAAAAGAAAUAUAUGCUCUUGACCUCGUGUUCUUUCUUUUGUUGACUUGCCUCCAAUUGAUUCUAUAGAACUUGUGAUGUUACUGCAUUUUCCUCCCUUAAAGAAAGAUUUUUCGAUAGGUAGCAUCAUAGCAAAAACUUCUUCCAUUAUAUUUUGCUUGUAUUAGUUUUCUUGUUCACUGUUUUACCCUUGAAAUGCUUAUCGUUACUCAAAUAACUAAUUAUAUACAGUUAUUUCACAUAUUCACAUUACACGAUGAUUUCUGACAAUGCAUUUUGUCAUGUACUCCAAUGCUGAUUGAUUUAAAAUAGAAAGUUGUAUAGUCUUGAGUUAGCACUAUUCUGUUAAUGUGGAGGCAGCAGUGCCCAAUACAAUAUGUUUAAUUCAGGGCUUAUGGCUAUUCACUUUGUCUUCCAUCAACAAAGUGAUUUCGGAAUGUUUUUCAUGUCUGAUCAUUUUUGGUAAAUUGAAUGGUUUUUAUGUCUAAAAUAGCAGUAGCGAAGGUUUCAGGUAACUUAACAACAAAACCUGAUUUUUGUCUUUAUCCAGCGAUUGUGGUGAAGUAUUGGCUGAUGCUCUGAAGACACUUCUCUGAGAAGGCAAACCGCAGGAUAUGAUAAGAGCAGCUGCUUUCAUUAAACGCCUAGCUACCUUUGCUGUCCUUUGGUUCUCCAGAAGCCAUAGCAGGUUUGAGUUUCUUUUGUCUUGCACUGUUCCAUCUGGUUGAGCUAAUAAUUGCCAGAUUUUUCAUGUUUGACUUGUGGUCAGUAUGAGCAGUGAUGCACAUUCUGAACGGGCACUCAUGUGCAGAGCAUUGGUGGAAUAAUUCAUAAUAUAAUGCAAUAAAUCACCAUUAUAUGAGCCCUACUUGUAUGUAGUUCGUAUAGGUUGCUCAAGGUUGACCCAGUGUCCUUAGGUAGAGUAGCUCAUCAGGAUCGAUAUGUAAUGUGUAUGACAGUAGAACAAGUUUUUCUGCCUUGAUUGUAGUCCAAAUACUAUAGAUCCAUUGUAACCUAGUCACAAUUUUGGCAUACCCACUUUGUAACCUAGUUUCGUAGAGUUUGGCGUCUAUUACAAAGCCUUGCUAGUCAUGAUUUUGUGGACAAUUUACGGUCGUUUAAUAGUUAUUUCGUAAUCUGUCUUCAUAGUUUUCUUGUGUGCAACCAGGCUAACAAAUUUGUUGCCGCUCUGCGAGAUAUAGCAGUGGCAGGCUUCUGCUAUUUGUUUCUUGUUAGACAUGGUCGCAUGGACAAUGCCAUCCCCUGUGCGAAACUACAAAUUGGUAGUCGUAAAGUGCUAGACUGCCCGAGCAGAAGAAAGAAAGAAAAAACAGCAGUUUUUAUCGUCUAUUUUUUAUCAUCGUGCUCAUUGAGGCUAACGCGAACUGCAUAAUGAUAUUAACAUAUCAAUCGAGAUGCAUAUGACAUUUCUUCUGAACAUGCUCUGCUAUUCUCACAAUUUGGUAAAUUUGCUUGGACCCUCGUUCCGUUGCACGCACGGAAACAGGGUGUUUAUCAGAAGUUACAAACACAAGUUACAGGUUUUCAACAGGUAAAGAAUGUGAAGAAAAACCUCCCUAGGUUGUGAUUACAAGAACACCGAUGGCGAGGGAUUGACGACGAUAUGCCUAAGCGGAUUUGAGACGUCUCCCCCUCCAGCGUGCUUCACAAACUCUGCAGGACUAUGGAAUUUACCAUGGCAGACACACAUUAUACUCACAUCCUCACCUUUCCUGUACUUGUACAGGAAGCCAUCUAUCUUCCUACCAUUGGGCCCUUCCACCUUGGAAGACACCAUUGGCAUGUCCAUCAUGAUCUUCCCGAUGUCGCCAGUGCUGCUCGUCCGCAUUGUCAGUGACCCAAGCGUUCGCAACGGGGACUGCUGUGUCACGGUGCCGUUUAGCGGCUUGCCAGUUGAU
Sequence
(XR_001544766.2):
UGAAAGUUCUGGUAUCCUUAUGCUCCUUUUUGCAUUACAGAGAAACUCAUUUUUAAAUAAGCCUUUGCUUAUGAUACAUAUUAAUGUUAGUGCAUGCUCAGUAGACAGCUGUAUCAAACUCCUUGCUUUGGUCCCAAAGCAAUUGCCAGUGAGUGAUAAAAAGAAAGCCAAAGGCUAGAGAAGAGGUUGAUGCUGAACUUAGAGGUGCCUCCUUUACUCUUAAUCGAAAGGUUAGGAGAAGUAUACAGAAAGAAACACUAUCUGCUCUUUUCGAGACUUACCUUCGUAUUUUGAAGCAUAGGAUGUAUACUUCAAAUUCCAGGACUUCAGGAGCAAGGCCAUUAAUGUAUCCCCAGAUGGAGGGAUUAGGAAAAUUCUCACAUUUAAUUGAUUUGGAUUUCAUGGGCGAACUUACCGCAUGUCUCAAGAAGCUUUCUGGGUAUACCGACCAUCACAGUGAGAUUCUACAUGAUAAUACACUGUCUACAUCACAACAUCUGCAAUGCUGCAUAAUUGUGUUUAAUGUCGGGAGGAGCAACCUUGAAGCUCUGAAUGUCGACCUGGAAGACUUCUUUCUGCAGCUUUUUAACCACAUAUUGGGAGUAUCGGCCUGACAGAUUGGAAUUCUAUUGAUUUGGCGAUUGUGGUGAAGUAUUGGCUGAUGCUCUGAAGACACUUCUCUGAGAAGGCAAACCGCAGGAUAUGAUAAGAGCAGCUGCUUUCAUUAAACGCCUAGCUACCUUUGCUGUCCUUUGGUUCUCCAGAAGCCAUAGCAGGUUUGAGUUUCUUUUGUCUUGCACUGUUCCAUCUGGUUGAGCUAAUAAUUGCCAGAUUUUUCAUGUUUGACUUGUGGUCAGUAUGAGCAGUGAUGCACAUUCUGAACGGGCACUCAUGUGCAGAGCAUUGGUGGAAUAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
64.84%
ME_num:
MEP:
26.83%
HE_num:
HEP:
8.13%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.83
Avg Expression:
5.99
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.67452333790678 | 9.07054334439048e-07 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.7187386203771 | 2.58998072953285e-08 |
| 3 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 4.36405998095374 | 0.010830524961816 |
| 4 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 1.7967032856636 | 0.0202251424830225 |
| 5 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | 1.84614812300151 | 0.0388121672345123 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.8784921062056 | 5.52773654971172e-11 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.05089449534638 | 1.05625166583761e-05 |