Chr:
Chr8
Start:
4550564
End:
4557201
Strand:
+
Ref_name:
LOC9267794
Sequence
(XR_001548206.2):
GCCAGGAUCUGAUCUUUCCGACUAAACUGAACUCCCCGGCAUCCACCUCCGGGACUCCCGUGGCCUCCCGCACCGCCGCAUCCCGUCCAUCCGGCCGGCCGGCGGCCGCCAUGGUCGCCGGCUCGCCGCCCUCCUCGUCUUCCUGCGGUCUGGGGACCCGUUGGUAAGAGCGGGAUAAAAGGAGGGUUUCGUUGCAAAAUCUCUCUUCCCCAUCGCCUCGGGUUUUGAUCUGAGCCGCACAGGGGAGAUCGAACGGUCGAGAUCCUGUCACGGGUGGAGUAGAUUGAUAAUACGGGUGUAGUUCGAGGGUCUCUUCGGAAUUAAACCAGUCGCGUGCUCGAGUGGGAUCGUGAGGCCCACUUAUCGGUAGCACCCGGUGGCGGCAACUCGCCGGAGACCGAACCGCUCGCCGGAGACCCCCCCCCCCCCUGGGCGCCGUGAAGCCACGGCGCCGCCAGAGCUCGCUUCUAGGAGUCACUGGGUUCUACACCACUCAGUCCAAUCAAACCAAGGCGAGGGGAGUGCCGCUCCGCGGUGGAAACUCAGAGAUCGAGGGAGGAGGAAGAUGGCCGGUUGGCCGCCGCCGCCGCCGCAUCUCACGCGCCGGCGGCCAGGUGGACAGGCCAUGGCGGCGCCGCCCAUUCUGCUGUUUGCUCGCUAGAUUUCAUCUUGGUCAAAAGGAGGAGGAAAAGCAAAGAAAGGUGCAAAUGCAGGACGCAACUAUUAAAGCGGGUGGCUUGUGAAGUACAUGGAUCAAUGUAUGGUUGAGGGCUUAAUGCAAGACAACUGCAGGAAACCCUAGCUGCACUGUUUGGAAGCUUCUUGUUGGAAAGUUGAAAUGCAGCUCAUUUUGAGCUUCUCAUGUGUGCAUAAAAACUCCUUUGAUGUAAUGAUGUAGUGUGGUAAUUUUGAAGGAUCUUUGGCUUAAUUAGACUUUGCUAGGUAUGCAGAAUGGUGGAUUUGACUCUCACGCUGAAUGGUGGGAUUUAUGGUACCAAGUUACCAUGACAAAUUUAAUUGUCUUCGCAAACUUUUGUCUUUUAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
1.22%
ME_num:
MEP:
72.15%
HE_num:
HEP:
26.42%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.59
Avg Expression:
7.84
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.58716330415975 | 0.000127583105310238 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.52970006312285 | 0.00244864415079546 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.70011680257029 | 0.000423027144729286 |
| 4 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.37533089252305 | 0.00208470247630264 |