Chr:
Chr10
Start:
6597053
End:
6599571
Strand:
-
Ref_name:
LOC9267697
Sequence
(XR_001540196.2):
CCACUGCUACCGUCAAUCUCAAUCUCCCACUACCCAACUAUUUAAGCAGGCAAGGUAGCCAUGCUCAUCCUUUUUCCCCUCUCUUUCUCCUUUACUCAGAAAGGAAUCGAGUUCCCAAAAUUUCUUCAAACUGCCGUGGUCGUCGGCCGAUCUGUCGCUGCAGGCCACCGGUCGUCGUCUCCUCGCGCCACCAGACUCUUCCAGAGCCGGCAAUCAAUCCUUCCCCGAGGAGGUGCAUGAAGGGGAGGAAUUCUACGGUGCUAACGAGUUCAUGUUCUAGGUCGAUCUGCUCUCAAGCAUUGCCUGUGGUGUUUUUAUCCUAUUUUGUGUUUGGGUCUUUUGUUUGUAGGGAGUGUGUUUGGCCUGUUGGCCCCUAAAACCUGUCUUAGUUAUCUUUUAUGUAAUAAUUUCUGUAAAAACUUGGGUAUAUAUAUCGAAAGCUGUUCUGUUUAUCAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
57.52%
ME_num:
MEP:
11.99%
HE_num:
HEP:
30.28%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf
Tau :
0.96
Avg Expression:
235.17
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -1.95391497788291 | 0.000110842735179762 |
| 2 | Nipponbare // shoot_apical_meristem // 0_days_after_shift--/--Nipponbare // shoot_apical_meristem // 12_days_after_shift | 3.28040845931564 | 0.000777992501898764 |
| 3 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | -2.69370300714796 | 0.00873090081805927 |
| 4 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -2.55570526963989 | 0.0035214118142257 |
| 5 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 3.07627441470786 | 5.07706560444436e-05 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.01694478055941 | 0.00411023715443799 |
| 7 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -6.06550260082061 | 7.87504484903198e-20 |
| 8 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | -1.35793341495619 | 1.38070113485476e-18 |
| 9 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -2.92070515259557 | 2.47744346080331e-14 |
| 10 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 4.60691945605006 | 0.000104123932996428 |
| 11 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -7.58745437764297 | 3.14839830187994e-10 |