Chr:
Chr4
Start:
20724819
End:
20726986
Strand:
+
Ref_name:
LOC9267673
Sequence
(XR_001545065.2):
AAUUGGAGGGGGGGCAAAAGGGAGAUCGUGCUGGGAUGGGGGCGAGCCUGCACGCGUCGUGCUUCUCGCGGCGCAGGAGCCCGAAGACGAGGGCGAGGUCGUCGGAGAGUGCGAGGCUGCCAUGGCCGGCGUCCUUGCGAGGAAAUAUCAACAGGAACAUUCUUUGCAGAUGGAGAUGGAAUUGUGUACAUGCAGGUGAUAAUUGGGGAUGCAUUUUUAUGUCGGAAUGGAAGAAUUGAGUAGUUGUUUGCAACCUUCAGUACAAUCUACUGGUAAUUUGUUUCAUUACAGAUGAUGCAGUUUUGGGACUGAUGAUGAAUGAUAAGUUAGCUAGCUAGCAAACAUUAGAAGCUAAUUUUAAAGUUGCUGAACUUCCGUAGUAACUAAACUCUGAAAUACACUAUCUAAAGUAUGUGACACUGCCUGAUAAAAUGUUAAGGAAGUGUAAGCAUUUCUUGAUACAAAUGCUCUCUCUUAUUUGCUGAUGAUCUAAUCUAAUAUUUAUUUUGCUCCAUAUAAUUCAUGCUCAUGUUAGUGAAGGUAUAAAUUGCGAGCACUUUCACCAUUAGGCAUUAAGUGCUUUAGCCUGUGUUGCUUUACUUUUCCUGUGAAUAUUAUCCACACCUGAUUAUUUAAAUCAUACCCUUUUUGAUAAGCAUGGAUGUAGUCUAUAAAUUCUAUAAGAUAAAGCUUAAGUUCAGUUUUGUUCUGAUAGUACAGAUUAGAUAAAGAUGGCAUCGAUUCUUAUCUCUGUCUAUCGUUUUUUCUUUCCUGUCUAGUAUCCAUCUUCAAUGUCUUUUAGCAAGGAGGAACGAAGAAAAGAAACAUAUUGUAUAUUUUACCUUUUAUUUUUGCUUAUCUUGGUUCUACCAUCAAUGCUUGCACUAUUUUGUCUUUACCAAUGGAAAAGCGAAGCACUGCACAUGUGUAAGUUAAAGGAACUCUUUUGGCUUACUUCUGCAAUUUCUUAAGUCUUAACAUGAUAUAAUGGCUUGAUAUUGUUGAGUUGCCAGUUUUGUAAUAGUAGUUUGAGUCAUAUAUAAGUAUGCAUUCAUUUUUGGAAAAAAAAAUAUGGAAAGAUGAGAGGGUGAGAAGUGAGAUAGGACGUGGGAUUUCUCUUUUGAUGAAGAAUCUAGCAAAGUGAAGCUGACAAGCAUAGCACAGAUCAACGGUGCUUUUCCUCUUUGCUUUGACAAAUACCAAAUAAGGCUAACACCGAUGGUAGCUUCAAAACAAGAAGAUCAUGUAAAUUCAUCCUUGUUAUCAACAAAUUGCAUGCAUUAUCACUGAGAAAAUAUCUGAUGCUGUCUGCCGAAUUGCCAAUAUUGUCAAUUUGGGGAAUUACCCUAUAAUACAUAAAAGACUUUGAUAUGUAAUACUUGCUGCUGAUGCUAAGGUUCUGAGUUGAAAACUGCAACAAGCAAAUAAAAUACAUUUUACUUCCAUUUUUUUUCUGCAUGGGUUACUUUGUCUCAUUUUGCUGUGUGGAUACUAAAGUAUAUCUCUUGCUUGUAACUUAAGAUUGGUUAUAUAGACUAGGACUCCAAAGCAUAAAGUGAUGAGUUAAGAUAACAUUAAUAAGAGAGCUUGGUACAGUCAUAUCACGUACACAUAGAUGUCCACAGCUGCAUCACUGAGGAAGUGUUAGUGCAAUGGUUAGACCAAGAAGUGCUUGAGGCAAAAUGUGCAAACAAUUUUGUGUAUAUCAGGAAUCGAGUAUUCCCAACCUUUGGCACAUACAUGCUCUUGAUAUUUUACAUGAAACUCAUAUGAUAGCUUCUUUUUUACAGAAGAAUAAGUUGAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
12.2%
ME_num:
MEP:
87.6%
HE_num:
HEP:
0.0%
Type:
MCR ()
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.65
Avg Expression:
3.72
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.16077220895871 | 5.02615606995078e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 2.09895394300084 | 8.50211157968068e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.45605037599872 | 2.89441439247426e-07 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.21159722659144 | 8.62568208133132e-05 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.95063467190362 | 0.000108052979048069 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.98788667696882 | 5.25005447367983e-05 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | -1.23130604750082 | 0.0143583581966512 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.47829197029027 | 0.0211956547775087 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.51542795874285 | 0.00446956984651608 |