RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC9267654

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr3

Start:

21954274

End:

21957722

Strand:

+

Ref_name:

LOC9267654

Sequence
(XR_001544019.1):

UCUCCGUUCCCUUCCCCUGACAGUUUGGGUGUCGCCGAAUCUCACUGGGAUUAGUUCGCCACCGUAGGGAGUUGCCGGGACUGGUUCGUCACCUCUGCGACCUGGCGACCUGACGAUCUGCUACCACGCAUUCUACUCCUCCCCAGGUCAACUUUACACUCCCUUUGCCUAAUCCUCUUAAUCAAUAUAUAUGAUCGAUCCAGCCUGCUUGCUUGCGCUGAUUCCAUAUUUGUUGUUCUACUCCUCUGCUGAAGCCAUCAGCAGACACAAUUUGGUACACUACUACUUAAAUCCCUAUUAUAUGCAUAUAUACAUAUCUGUUCUAGCCCCUGAUCUCUAUUCUUGACUUGCUGCUCAUUAUGAGUUUCACAUGAUUGGUAGGAAGGAAAGAAAAAAGGGAGUGCAGGCUAGAAUGCUAGAUUAUUCAGUACUAAAGUUUAAACAUCACCGUCCAGCAUUUGUGCCCCUCACCAAUAGCCUGCUACGAUGGCCCACUAGAUGCCAUGGCCGCAUGUGUUGUUCAUGCUGGUGGCAGCGAUGGUGGCAUCCAGGCCCACAUCAAGGCCUGCGCCACGCUGGGAGCAAUCUGCUCCUCCGUUGUCACCGCACAUAACACCAUAGUCGUUCAGGUAUGCUGCUGAAUUUCUUCCUUUUCAGUUUGCUCUCUUCGGCUGAUCGGCUCCUAUGCGGGCUUCUGAGAUAAGGAGGAGAAGAAAUGAUUAGGCUGACGCCAGUAAAAUUUCUCUCUUUAACAAAAGCGUUCUAUGUGCUUGGUAAAAUUUUUAGUGGCAAAUCUAAGUUUAUUCUCAAAUACAUUUGUUCCUGCAACUUUUUUAAUUAUAAUGUCGUAUAACUUUUAUGCCAGCUAACUUCUGCGUAAAAAACUUUUCACUAAUAAUGAUAAAAUAUUGAAGAUGACAGUGCACCAUCUAUGUCAACUACCAGAAAUGUACAGGUUAAAGAUGUGUACAUCAUCCUUCAUAAUGAAAUCCUGAUGUACAUCGGUACAUAUAUAUGCCAAUUGUUUCUGGAAUCUUAACAAAUUGGUCUACAAGAAUAUAUACUUAAAAAAACCUUUUUUUAUUAUUAUCAAUUACGCUCAUUCAGGAUUGUAGAUAAAUGUAUAUGAUAUAGUACUACAUGGCAGAUGUGAUUUUUUCCCCAAGAUAUAUACUUCAAAAAUAUAAAAAGUUAGUUGGAGAGUUCAAGUUUUGAUGUUCUUUGCUUAGUUGUCAUUUUCCUGUAAAUGUUAAUGAGUGAAUUCUGAAGUAAUGUCAGUAUUCCUUCAUUGUACAAUACUGGUAAUAAUAUUUUGUGGGCAUGUCAAUGAGUUUUCUUGCUGUCACCUUUCUAUGCUUCUGUUUUUAGGUAUGGAUGUUUUCUUAUUGUCUUCUUUUGAUGAUAUAUGUGGUCUUCAUAUUUCUUAUCAGAUAAUUUAGGUUUAGUUCCACGAUAGCAUAUCAUGUUUAUGCUAUCAGAAGGUUUUGCCUCAAUUUCCUUCCUCUCCAACAAAUCAUAUUUUAUUUGUUAAUUCGUCGUGCGCUAAUUCAGUACACAUAAUGGUAACAUACGCAUUUGCAUUGAUGGUAUUCUUUGUCGACAAUCUUAUAUUGGCUAUUGUGAUGCAUACAUCAUCAGAAAUUCACUGUAAGCCUGACAAUCUUGGCAUAUUACCCUUAUAUUUGGAUCAUGCAGUUAAUUUUCUAUGAGACAAACCUCAGGGUCUUUACGGCUCAGUAUAGACAGAUAAUUGUGCCGAUAUUAAGGUAAUGAUAUGAUUUCAUGGUGCAGGUCUUUUAGCCUCCUAUCUGGAGGAAGCUCCAUUAUUCUACGAAUCAUAUUGUAACCAAUACAUUGGGUCAAUAUUGGGUCUAUAAGUCAAGGCAGUAAUCACAGAUUAUGUUGUACAUCUAGCGAACAAAUAUUUAUUUGGUUCGAUUGAAGAUUUCAGUAUUUGUGAACUUUACUAGACCGCAAUUACUACAUUUUUAAAAUCAGUGCUGGCCCUAUGUAUGUUAGCUAACAUUUUUCUUGUGCUAUAGUCAUUUCUAUAUCUGCUACUAUUGUUUAAUAUUUAAUGGAACAUUGAUUUCAUAGGUUAGCGUUGUUUGCAGGGUGUUUCAGUGACACUGAAACCAUGGUUGCCUGAGAGGAUUAAAGCCACAGGUACUUCUGAGUUGUAACCUGCAUAGUUCCAUUCUCGGUUGAUCUGUGUAGUCCAUACCGAUUAACAAUACAUAUGUGCUAUUCCAAAGAAUCCAACCCUUAGUAUCUCUAGCUAUACGUACUGUGUUAUUCUCUUUUCUGCUUUGAUCAUAAAGUAUUAUUUCAAUUUAUUUGUGUGUGACGAAGUGACAUGCACUUCAAACAAUUUUACAUGAGACAUGUCAUAUGUUCCAAUAGGGCACACUGGGGUGUAAUUUUUUCUUGACAAGCAUUAUUCCUACUUUCAUUUUUUUUUCAGCGCUGCAUUGUUUUGGAAUUUUCUAAUAACCCAUCCUUCCAAUUGAAUUUUUUCUUUGCAAAUAUACUUAUAGAGUUUUCAUUAUAAGCUGACUUCAAAAUAUGAUUUUAUAACUUUUUUAAUUCAUGAAAUGUUAUGUUUGCCCCUUCUCCAAAGCUACAGAGAUAUUUCAACACGGUUUCUUAUAUGAGUAUUUGUACUACCUACUAUAUACUCAUUGUGUAGCAAUAUAUGGAUGACAUCCAAACAUGCCCUGUAUUCUAUAGGGGAUACCUCAAAAUUCUGUGCCAUUAUGCAAAGGAGGUACCAAUCGUCUACUAAUCUGUUGUAAGUGAUGUACUGUUGUUUUUAUUAAGCUAAAGCACUAAAUUUUUCUUUGUGCUGCAGUGCUAUAGAUGAGAAAAGAUUCAAUUAGUUCAUGACGAAGGUAUCUAUGAGAAAAUGCUGCAAUUCUCAUAUCACCUAAUGAUUGUUGUUUUUUCUAACCUAUACUCCACAUUAUGUAAGAUCCAUUCUCCUCUGUCAUUGCUACUUUUUUGUAAGUGUACAUGAUUGUACAAACAAUUAUUUGAGCAAACAGAUUGUAUUCACAUUUAAAUCUUGGUGAUAGUCACAAUGUGUACAUGCAUAUGUGGGUAUGCUUCUGA

Sequence
(XR_001544020.1):

UCUCCGUUCCCUUCCCCUGACAGUUUGGGUGUCGCCGAAUCUCACUGGGAUUAGUUCGCCACCGUAGGGAGUUGCCGGGACUGGUUCGUCACCUCUGCGACCUGGCGACCUGACGAUCUGCUACCACGCAUUCUACUCCUCCCCAGGUCAACUUUACACUCCCUUUGCCUAAUCCUCUUAAUCAAUAUAUAUGAUCGAUCCAGCCUGCUUGCUUGCGCUGAUUCCAUAUUUGUUGUUCUACUCCUCUGCUGAAGCCAUCAGCAGACACAAUUUGGUACACUACUACUUAAAUCCCUAUUAUAUGCAUAUAUACAUAUCUGUUCUAGCCCCUGAUCUCUAUUCUUGACUUGCUGCUCAUUAUGAGUUUCACAUGAUUGGUAGGAAGGAAAGAAAAAAGGGAGUGCAGGCUAGAAUGCUAGAUUAUUCAGUACUAAAGUUUAAACAUCACCGUCCAGCCUGCUACGAUGGCCCACUAGAUGCCAUGGCCGCAUGUGUUGUUCAUGCUGGUGGCAGCGAUGGUGGCAUCCAGGCCCACAUCAAGGCCUGCGCCACGCUGGGAGCAAUCUGCUCCUCCGUUGUCACCGCACAUAACACCAUAGUCGUUCAGGUAUGCUGCUGAAUUUCUUCCUUUUCAGUUUGCUCUCUUCGGCUGAUCGGCUCCUAUGCGGGCUUCUGAGAUAAGGAGGAGAAGAAAUGAUUAGGCUGACGCCAGUAAAAUUUCUCUCUUUAACAAAAGCGUUCUAUGUGCUUGGUAAAAUUUUUAGUGGCAAAUCUAAGUUUAUUCUCAAAUACAUUUGUUCCUGCAACUUUUUUAAUUAUAAUGUCGUAUAACUUUUAUGCCAGCUAACUUCUGCGUAAAAAACUUUUCACUAAUAAUGAUAAAAUAUUGAAGAUGACAGUGCACCAUCUAUGUCAACUACCAGAAAUGUACAGGUUAAAGAUGUGUACAUCAUCCUUCAUAAUGAAAUCCUGAUGUACAUCGGUACAUAUAUAUGCCAAUUGUUUCUGGAAUCUUAACAAAUUGGUCUACAAGAAUAUAUACUUAAAAAAACCUUUUUUUAUUAUUAUCAAUUACGCUCAUUCAGGAUUGUAGAUAAAUGUAUAUGAUAUAGUACUACAUGGCAGAUGUGAUUUUUUCCCCAAGAUAUAUACUUCAAAAAUAUAAAAAGUUAGUUGGAGAGUUCAAGUUUUGAUGUUCUUUGCUUAGUUGUCAUUUUCCUGUAAAUGUUAAUGAGUGAAUUCUGAAGUAAUGUCAGUAUUCCUUCAUUGUACAAUACUGGUAAUAAUAUUUUGUGGGCAUGUCAAUGAGUUUUCUUGCUGUCACCUUUCUAUGCUUCUGUUUUUAGGUAUGGAUGUUUUCUUAUUGUCUUCUUUUGAUGAUAUAUGUGGUCUUCAUAUUUCUUAUCAGAUAAUUUAGGUUUAGUUCCACGAUAGCAUAUCAUGUUUAUGCUAUCAGAAGGUUUUGCCUCAAUUUCCUUCCUCUCCAACAAAUCAUAUUUUAUUUGUUAAUUCGUCGUGCGCUAAUUCAGUACACAUAAUGGUAACAUACGCAUUUGCAUUGAUGGUAUUCUUUGUCGACAAUCUUAUAUUGGCUAUUGUGAUGCAUACAUCAUCAGAAAUUCACUGUAAGCCUGACAAUCUUGGCAUAUUACCCUUAUAUUUGGAUCAUGCAGUUAAUUUUCUAUGAGACAAACCUCAGGGUCUUUACGGCUCAGUAUAGACAGAUAAUUGUGCCGAUAUUAAGGUAAUGAUAUGAUUUCAUGGUGCAGGUCUUUUAGCCUCCUAUCUGGAGGAAGCUCCAUUAUUCUACGAAUCAUAUUGUAACCAAUACAUUGGGUCAAUAUUGGGUCUAUAAGUCAAGGCAGUAAUCACAGAUUAUGUUGUACAUCUAGCGAACAAAUAUUUAUUUGGUUCGAUUGAAGAUUUCAGUAUUUGUGAACUUUACUAGACCGCAAUUACUACAUUUUUAAAAUCAGUGCUGGCCCUAUGUAUGUUAGCUAACAUUUUUCUUGUGCUAUAGUCAUUUCUAUAUCUGCUACUAUUGUUUAAUAUUUAAUGGAACAUUGAUUUCAUAGGUUAGCGUUGUUUGCAGGGUGUUUCAGUGACACUGAAACCAUGGUUGCCUGAGAGGAUUAAAGCCACAGGUACUUCUGAGUUGUAACCUGCAUAGUUCCAUUCUCGGUUGAUCUGUGUAGUCCAUACCGAUUAACAAUACAUAUGUGCUAUUCCAAAGAAUCCAACCCUUAGUAUCUCUAGCUAUACGUACUGUGUUAUUCUCUUUUCUGCUUUGAUCAUAAAGUAUUAUUUCAAUUUAUUUGUGUGUGACGAAGUGACAUGCACUUCAAACAAUUUUACAUGAGACAUGUCAUAUGUUCCAAUAGGGCACACUGGGGUGUAAUUUUUUCUUGACAAGCAUUAUUCCUACUUUCAUUUUUUUUUCAGCGCUGCAUUGUUUUGGAAUUUUCUAAUAACCCAUCCUUCCAAUUGAAUUUUUUCUUUGCAAAUAUACUUAUAGAGUUUUCAUUAUAAGCUGACUUCAAAAUAUGAUUUUAUAACUUUUUUAAUUCAUGAAAUGUUAUGUUUGCCCCUUCUCCAAAGCUACAGAGAUAUUUCAACACGGUUUCUUAUAUGAGUAUUUGUACUACCUACUAUAUACUCAUUGUGUAGCAAUAUAUGGAUGACAUCCAAACAUGCCCUGUAUUCUAUAGGGGAUACCUCAAAAUUCUGUGCCAUUAUGCAAAGGAGGUACCAAUCGUCUACUAAUCUGUUGUAAGUGAUGUACUGUUGUUUUUAUUAAGCUAAAGCACUAAAUUUUUCUUUGUGCUGCAGUGCUAUAGAUGAGAAAAGAUUCAAUUAGUUCAUGACGAAGGUAUCUAUGAGAAAAUGCUGCAAUUCUCAUAUCACCUAAUGAUUGUUGUUUUUUCUAACCUAUACUCCACAUUAUGUAAGAUCCAUUCUCCUCUGUCAUUGCUACUUUUUUGUAAGUGUACAUGAUUGUACAAACAAUUAUUUGAGCAAACAGAUUGUAUUCACAUUUAAAUCUUGGUGAUAGUCACAAUGUGUACAUGCAUAUGUGGGUAUGCUUCUGA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

21

LEP:

4.27%

ME_num:

258

MEP:

52.44%

HE_num:

212

HEP:

43.09%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

callus

Tau :

0.70

Avg Expression:

16.26

Tip: OSA-LNC9267654 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN1.1331221190053.10277023588506e-19
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA-1.075135198315925.46358678652517e-09
3Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated1.138500852482480.00160191865046604
4Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated2.516196127756011.45128202861224e-10
5Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA1.103971378698811.05936807264837e-16
6Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min"-1.719519624474490.00129524350808802
79311 // leaf // control--/--9311 // leaf // salt-1.186257851959450.0179468772945317
8Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA-1.639993551233863.45903510592952e-18
9Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day1.404467674124010.00572398254392783
10Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated1.371466101835790.0248987786049249
11Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min"-1.454057319572470.0128429382375293
12Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae-1.174701528190461.23898272337146e-11
13Nipponbare // panicle // AM--/--Nipponbare // panicle // PM3.531286659289976.61256112133679e-15
14Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day2.043233483149082.88460387243957e-07