Chr:
Chr8
Start:
7363734
End:
7367992
Strand:
-
Ref_name:
LOC9267621
Sequence
(XR_001548294.1):
CGCCGAACCGAGGCUUCACCUCCACCCAGCUACAUCGCCUCCUCCCCAUUACCACUCCUGAGCCGAGCAAACCGAGGGGGAGAGCUCCGGCUUUUCUUUUCCAUCUCGACCUUGCCGCCGGCCGUGAAGACGACGGCCGUUGCCAUCGCCAUUGUGCCGUGCCACGGGAACGCAGAGCUCGCCGACGAUGCUCUGGAGCGCGCACUGGACGCCGUCAUCGGGUUCUCAUCGUCGUUCCGACCGAACCGAACCACCCCAAGCCGAACCCUUGCGCCACCAGGAUCACCUCGACGUCCUCUUCAAGAUACCCCAAGAAAACCCAUCCAAUGGCGCAGCGAUCUUGGAGAUCGACAUCGUGUUCUCCAACUCCAUUCAAUCGCUUCCAUCAUCGAUUCCAUUCUCUCCGUGACUCCCCUUACAGAUCGAGCAGCCGACGUCAUUCCUGGAGUUGUGCCAUGCCGCCAUGGAGCUUCGCCGUCGCUGUGGCUCUGCAGACAUCCCUAGCCUUGUCUAGCAUCUCGGUUUUAGAUUUAGUCUUUGAGUGAUGCGGGUAAUCGACUGCUUCUUCUAGGACUUGGAACUUAAUGGGGGUAAACCCCUAGUCGGUGUGCUUGUGGUUUGGGUAGACAAGCUUCCGUUGUUCUCUUAUAUAUCUAUUUGGCCGGUCGGCCUAUGUAACUAUUAAGUUGAUUUAAGUCUUUAAGUUCUUUUCUUCAAGUUGAUGUAAGUCUUUAAGUCCUUUUCUUCUUAAAUGUGUCUGCUAUGUAUGUCCAUGCUUAAGAUGAAAGUGUGAAUCUAGUGUAUAUCCUGGGAACUAGAUUCACAUGAGUAUGAGUUAAGAAUAUUUGAGAUGUUGUA
Sequence
(XR_001548295.1):
CGCCGAACCGAGGCUUCACCUCCACCCAGCUACAUCGCCUCCUCCCCAUUACCACUCCUGAGCCGAGCAAACCGAGGGGGAGAGCUCCGGCUUUUCUUUUCCAUCUCGACCUUGCCGCCGGCCGUGAAGACGACGGCCGUUGCCAUCGCCAUUGUGCCGUGCCACGGGAACGCAGAGCUCGCCGACGAUGCUCUGGAGCGCGCACUGGACGCCGUCAUCGGGUUCUCAUCGUCGUUCCGACCGAACCGAACCACCCCAAGCCGAACCCUUGCGCCACCAGGAUCACCUCGACGUCCUCUUCAAGAUACCCCAAGAAAACCCAUCCAAUGGCGCAGCGAUCUUGGAGAUCGACAUCGUGUUCUCCAACUCCAUUCAAUCGCUUCCAUCAUCGAUUCCAUUCUCUCCGUGACUCCCCUUACAGAUCGAGCAGCCGACGUCAUUCCUGGAGUUGUGCCAUGCCGCCAUGGAGCUUCGCCGUCGCUGUGGCUCUGCAGACAUCCCUAGCCUUGUCUAGCAUCUCGAUGAUUGCUUAAACGGUAAAGAAGUGAUUUAGAUGCUGACAUUUUCCUGAUUCAAGGCAAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
32.72%
ME_num:
MEP:
14.02%
HE_num:
HEP:
53.05%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flag_leaf
Tau :
0.86
Avg Expression:
154.84
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -7.02085210001293 | 2.84549654991194e-178 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -4.05980885099278 | 1.18673439814788e-254 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -8.75427526793509 | 8.2420491456336e-114 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -8.36399751378234 | 5.37398628376974e-67 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -7.58931996165883 | 1.4105611431658e-110 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -11.970173874202 | 2.28126258226379e-23 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -4.45855224824289 | 6.97588276763428e-289 |
| 8 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.26096745975548 | 3.65971786639485e-08 |
| 9 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | 5.90395583591215 | 0.00017801296293413 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.31060018786595 | 5.16350865580664e-12 |
| 11 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | -3.11213588000132 | 3.78685505733735e-09 |
| 12 | 9311 // leaf // control--/--9311 // leaf // salt | 1.7939878478464 | 0.000446833935530135 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -10.9851383572509 | 1.57150634017533e-38 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -7.59570996512529 | 8.65804743950604e-212 |
| 15 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.31767412345383 | 8.66503153195206e-12 |
| 16 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.11029990072146 | 2.54499009477569e-06 |
| 17 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.34841543176173 | 1.82057979450361e-21 |
| 18 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -5.73726337619635 | 1.0115899488173e-114 |
| 19 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -8.57324053035421 | 8.79914854631597e-100 |
| 20 | 9L136 // leaf // control--/--9L136 // leaf // salt | 2.21603268418216 | 6.0156794542402e-20 |
| 21 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -11.5094851439826 | 3.43135298260196e-42 |