Chr:
Chr6
Start:
23729043
End:
23730736
Strand:
-
Ref_name:
LOC9267613
Sequence
(XR_001546893.2):
UCUGCACUAGAAUUAAUUCAAGAGGAAAGACGAAUGGUCUGGUGGUGAGGAGGUUGUUUAACAGUUUAAGCUCCCGACCACUCGAGUUAUUGGAUAUUGGGGAUGAUUGGCAUGCUACUAUGGCAGUCCAUCCCCUCUAAUAUUGAUAACCAAUGGGUGUUUCAAGUGGAUCUGACGCCACAAUGUAGAGUUUAUAGAGAAAACAAAAUACAAGUGAACUAGAUCAGGCAUGAUCAAGUAAAACACAGAGACAUUAAGUUACAAAAAGAUUACCACAGCAAGAAGCUCAUCUACUACAGUUAUAUUUUUUUGGUUUCCCCUGAAAAGGGUAGCUGUUUUCGGUAUAGAUAUUCUUUGAACUUUAGAUUGGAGAUGAGAUGAUUUGGCGACCAUUACAGUUUGUAUACAAAGGAAGUGUGUACUCUUUUCCUACACUAAGCAUGUAUAAUACUUACAUCUGAUGCUAUUCUUCCAAAUUCUAUACACAUGAAUAUGUGAUUUCGCUGGCAGCUAAUUUGCUGAGGUUUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
1.42%
ME_num:
MEP:
8.33%
HE_num:
HEP:
90.04%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
2nd_leaf
Tau :
0.41
Avg Expression:
32.63
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.3487941025518 | 4.15269070243128e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.31876485022149 | 2.25351986640315e-08 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.51739305764537 | 4.99589838102155e-14 |
| 4 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | 1.16891045386429 | 0.00206494716860547 |
| 5 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | -1.30932330355546 | 0.00432569836362156 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.3256694806351 | 2.16545046798947e-11 |
| 7 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.43786014891155 | 8.2308459233902e-10 |