Chr:
Chr11
Start:
20389689
End:
20392250
Strand:
-
Ref_name:
LOC9267561
Sequence
(XR_001541240.2):
ACCCCCAAUCCCGAAACCCUCCGCCGUUCUCUCCCUCCCCUCCCCUCCCCUCUCACCUCUCCUCUCUCGGCGCGGGUUCCGGCCGGAGCUGCCGCCGGAGGGCGGUGGCGGCAGCGGCCCUCCCCUCCGGAUCUGGCGAGACGGCUACGUCCGCGGCUAGAUCCGGCACCGCCGCCGUCGGAUCUGGCGACCUGAGAAGGCGGCACGGAGGGUGGAGGCGGCGGCGGCCCUCUCCUCCGUCGUCGUCGCCGUGGUGCGACUUCCCACUGUUCCCGACCCCCUAGAUUGGAUAAGGAGGGGAGGAGGGCGGAGGGGAGGGUGAAGGAAGUUUUGGAGGGUGGCUACGCCGGGAGGGGGAUGGCGGUGGCCACCGCGGCCCCUACCCCAGCCGCGGCCUCCCAUCCACCUGCGCCCGCGCCGUACGGAAGCGACGGCAACGGCGUGCUCCGGCGCUCGCCCUCCCCCUCUUCCCACCACCCUCUCCUCCUCGGCCGCGCCUCCUGCCAACGUCCCCACCUCGCGCAGAUUGGGGGAAGUGGAUUCGGCAGGGAGGCAUGCCCACAUGGAGGUCGUCGACGCGGAGGAGCUCGCGGCCCUCGACGGCAACGCCUACAGUGCGGAGUUUGCCGGCGCGGGGAGCAGCAGGGCGGCGACUGCCGUCCUCCCCGCCUCGCACAGCCCUCCGCCUGCUCCGCUCUUCCCUCCUCGCCGAACCGAUGGCGCCGGCUGUCGUCCCCUACCUCACGGACGGCAGGGCACCGGGAAGGACUGAUCGUGCCGAUCCGACCUCUCCGACGGGAAGGGAGGGGCCAUAUGGCUGGGCUGCAGUCGAUUCGUGGGAACGACGGCGAGGCCGGAGGUAGUGCUAUCGAGCGGGUGGACGGUCGCCGCGGCUACCGCAGCUCGCGUCAUCGGCGGAUCCGGUGCCGUUGACCACCCUCCCCCCAGCCUCGCUCCACCUGUCGGCGUCGUUACUCCCGGCGCUCUUCCUCCGUCCGCGCCCUCCUCCUCCACUGUCGAGUUUGGUUGUUGGUGCCGGCCUCGCCGUCCUUCUGAGCCGGCCGGCGCGUUGGUUGGGCGUUGCGGGCGAGACGAUGCGUUCGUCUGACAUGCUGCGCACUGCCUCGCUGUCCACACCAUCGGCCCCGGUCUCACGUUGCUCAAUCCUCGUCCUGGAUGGACGCUCUCGGGGUCACUGCCCCCGUUGUUUGGGUCUGCGCGGUGGUCGUCACCAUUUUUUUUCGGGCUGCGCGUGGUCCUCACCGAAGCUCCUGGAACACGUCGUCGACUCAAGUGCCUUGCCUUCACCCACCACCAAUGCAGUUUGGUUUCAGCCUGAGCCUUCUCUUCUUUUUCUUUCGUUUUUUCUAUGUUUCUAUAUCAUUCACUCUUUGAGCUGUCACUGGACAGUAAUGGUUUGUGUAUUCUUCUCGCUGCCAAAAAGUCACUGACGAUUUGCAUUCUGCAUUGAAGAACCAAAGCAGGAAAGUGUGUGCAUCAUUUCUACAUUACUGCUACUGAAGAUUUAGAUAACCAUUACAAUCUUGAGGUUGAAGAUGAUAGUUGAGGAAUACUGGUUGCCAAUCCUGUCACUGCUGUAUGGCUCUUCCUCAACCUGCGUUGGUGGAAGAAUGCAGUUUUGGAUGCAUGAAGUAACCAAUUGUUACCUUAAUAAGUAUUGUGGUUUGAUGAAGAAAAUUUACUCACAGCUCACCCCCUUUUUUUUUUCUCUUGGCUUUUAUUCUUGUGGUGAUGUUUUUACUGGAUGCUCGUCAGUGAGGCAUGUGGUUUCCGAAUUUGUUGGCAGAAAUAUAGUUUUGCUCCUUGAUGUUCAACUUUUAAUCAUCUAUUAAUAUUGUCAAAAUGAAUCUGUCUAUCUUAUUAGGCAAAAGGAUAAGGUAAUGACACAUUUUUUGUUUCAAUUUUCCAAAUAAGUAUCAAGUUGUUGAUGUUUAAAGAACUCUUGUUCGGUAUUUUGACAAAUCAUGAAUAAUUCCAGUCCUUGCAUUAGUGAACGAUUCUGAAGCUACGCCAAAAGGAUCUCUAAUUGGCGAGAAGAUCCCAACCAACUUUCCUAUUGACCUUCUUGAGUGUAUUGUUCCAUUGCAUUUGUAUGUAAUACUGCAGAAUUUUGGACAGAAAAUCAUGUAGCAUGUUGGCACCUUGGAAUACACGACAAAUGAGCAGGAGCAGUCAGCAGACAUUUUGUUAUUGCUUUCAUUUGUGACCUCUUUCUUUAUCAAGAAGAAGACAAAUCAGUUACUCUGUCCAGUCGUAUUUGGAGUCUGAAAAUAUGGACACCGAUCCUUGAAUGCCGUUGCUGUAGAUGACCAUACAACAUAAUGUAACUCACUGUUUUUUUUUCAAGUUGUGUAAUGCAAUUCACUGUAUGGUAGUAUAUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
29.27%
ME_num:
MEP:
0.61%
HE_num:
HEP:
69.92%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.78
Avg Expression:
81.42
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.07592267427794 | 3.2049047700046e-11 |
| 2 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -10.7021885096023 | 3.66720480045565e-20 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.19899195579596 | 2.20590060094966e-19 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.33175293386117 | 2.82430734123582e-21 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.44489180805281 | 2.52127466781368e-21 |
| 6 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -9.44086078916331 | 6.04732890665769e-11 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.25320118876403 | 8.48017690059268e-19 |
| 8 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.3988297216437 | 2.55641198137158e-10 |