Chr:
Chr8
Start:
11437994
End:
11441020
Strand:
+
Ref_name:
LOC9267516
Sequence
(XR_001547926.2):
AUUCGUCCUCUCCCUCUCCAAUCUCCCUCUUCCUCUCCUCAGGUCGGGGCGCUGGCUGAGACCGAGCGGCGGCGGCUCGUUGCGAUCGGGGCAGCACCCCGCUUCUCCCGUCCAAUCCGGCGGUGGCUCGGUGACGAGAGGAGGGGCGGCGAGAGCUCGGCUCCUCCCUCGCCUCUUCUCCCCUCCAAUCCCGGUGGCAGCGGCGGCGGCGGCUCCGCGACAAGGAAGGGCGGCGGGAGCUUGGUUCCUCCCUCCCCUCUUCUCCCCUUCAAUCCCGGCGGCGGCUAGGCGACAAGUGCGGGACAAGGGCGGCGGCUCGGCAACGGCGGCUCAGCGGCGACGACGACGACAGCGACAAGGGAGGGGCCUUGGCGACUUUGACGACGACCGCGACGACGGAGGGCCUCGUCGACAACGACGGCGCGCGGUGGACGGCGACGAGCGGAUCCGGCACCACCUCCUCCAUCCACCGCGCCACCUCCAUCUCCGCCCCCAGCCACCUCUUCACCCUUCCCCGCCUCGCUCCCCUAGCCAGGGAAGGACGGUGGCGCGCGGAUCUGCCGCCUCCCGUCGUCGGGAGCGACGGCGGCGCAUGAAUCCAGCGGCCUCCGUCCUCGGGAGUGCCCUGGCGUGAGCGGGAGUGCCGGCAGCACGCAGAUUCGCAACGACGGUGACGGUGGCUGCAACGACGACGACAGCGGCGAUGGUAGCUGCGACGACGACGACGGCGAUGACAGCGGCUGUGAUGAAAACGACAACGCUGUGAUGCAAGUAGCGGCGGUGCUCUCUUCCUCUAUCCUCCGCCAUCAGCAGCACCAGUAUACCCUGGGACGCCUACCGACGGUUACUUUUUUGGGGGUGAUGUUUCGAUUUGCAAAUCAAAACAAGAUUGCUGCCUGAUACAAAACUUAAGUGCUGCUAAGCUCACCUGGAAGAUCUUGGUCACGCGGCAUCGGGUGAAAUUCUGUAUGGUUACAUUUAAUUGGGUUGUAGAUUCUGGGUUGUAAAUUUUGUGUUGUAUUGAAUGUUUGUCGGGUUCCGAUGGAUGCUAAUAGGGUUGUAACCUGUGUGCUGUAUCGGUUGUUACUGUGUUUGAUUGUUGGGCCUAUAUGGGCUUAGCUCUCUUGUUAUUUGAUACUAAUGUAAAUGAAUAUAAUAUGAUUGGGCUGAAAAUGGUGUGGUAUAAUGUUUGGGCCUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
0
LEP:
0.0%
ME_num:
MEP:
0.2%
HE_num:
HEP:
99.59%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.60
Avg Expression:
87.65
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.36154538289368 | 2.36051332936812e-13 |
| 2 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | 1.68912488157648 | 0.000454800253793989 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.14886243118113 | 1.9793449264924e-11 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.03807298949809 | 1.48205676237524e-24 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.84690332507103 | 1.10863837793286e-12 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.07210014956537 | 4.6018813194238e-23 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.99520418984924 | 1.27397905774858e-22 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.55670219322111 | 1.49854836241161e-15 |
| 9 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 2.53587783789223 | 4.386007214866e-12 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.13832311408458 | 6.39887797754519e-29 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.64667164077784 | 8.33021651182596e-21 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.25106159220602 | 4.86134634984429e-28 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.0006752957407 | 7.54084832052455e-25 |