Chr:
Chr6
Start:
14339442
End:
14343688
Strand:
-
Ref_name:
LOC9267491
Sequence
(XR_001546659.2):
CCGAGCGCACUCUGGACGGCGUCGACGUGGCAGCACCGAGCCGAGGCUUCACCUCCUCCCAGCUGCAUUUCCACACAUCAUUUUCCACCUCUAAGCCGAAGAAACCGAGAGGGAGAGCUCCAGCUCUCCUCUUCCAUCUCUUCGUUGCCGGCCGCCAAGAAGAAGGACGCCGCAACCCGUCGUCGAGACAUUGUCAUCACCAACUCUUUCUCGUUCCGUAUUCCUCACUUCAUGCCUACCACUUUACCCUUUGACGGAAACGUCGCCGUGCCCACGGGUGUUCCAGUGCGUGCACCGGGCGCCGCCGCAGCGACAUCGUCGCCGUUGCCGUCGAUUUAGACCAAGCCGGAGCGAGCCACCACGCCACCAGCUUCGCGUCGUCGUCCUCUCCAUUUCCCCUCAAAAAUCCUGAAGAAUGGCGCAUCGAGGAAGGAGAUCGGCCGUCGUCCUCCUCAACACCGGUCACCGUCGCCAUUUGCCGAAUCCAUCUUCUCCGAUCUUGGAGUAGUUUGAGCUGUCGCCGUCAACCCGAAGGAGUUUGCCGCCGCCGGACCUGUUCGCGAGCUAUUACGGACGACCAAGCUUCGCCAACCUUGUCUAGCAUCUCGAUGAUUGCUUAACCGAUGAAGAAGUGAUUUAGGUGCUAACAUUUUCCAGUUGCAAGGCAAGUCCCACCUCCCUCUCUUUGAUCACUUUGAACCUAUGUUUUGGUGGUUAUUAAAAAUGUUUGCAAAUCUUGCAUGUCAAUUGUAUACUAAUAAAUUAAAAUUUUGUUAAACUUGUUAGACAAACUCCUAUUAUUUUCAUUAUCUCCUUAACCCCACAUAUAUCCAUAUCCUCAUUCCUAACCUUAGGAAUCAUAUCCUAAUACUACUUGGAAUAUGAGUUACAUUGUCACUAGUUGACUAUACUGCUUAGCCAUGCUUAGAAUGGUUUUACUUAUCACUUGGGCUCAUAUUAACAUGAAAAAUGAUUUUAUUAAGAUUCUGGACAGGGAUGAAUAAAUGAAGUAUUUGACAAAUAAAAUGAUGGAAAACAUGGAUUUUAGGUUUGGGCCUCAAGUGGUGCACAUAUGGUAAUUAGUUGUGUACCGAUAGGGGGAGAGUGUGCCUAAACCGAUCUAAGGAUUUCACUCAAUGUCUGUUCAUUAUAUUUACCGUACAUCCACAUGUGUUUUUAUGGGGAACCUUGGCCUAUUAAGUUAAGCACUUGUCUGACCUUGCGUUCGGGAGGCCGUUCUAGUAUAGGUAGAGGCCAUCAGUGUACUGUGGGCUACCUAAAGGAACUACCCAUGUGUGUGUUGAAUCUUAGGACGAGUGUACUGUUCCUAAGCGUGUGAUCGUAGGAUGAUAAAUUCCAUACAUGUGUGAUUUCCGUGAGGGGACGAGUGUACUGUUCCGCCUCACGGCAUGGGCGUCUAAGUCUAUCCAAUACAACGAUAUUGUGCCACGUGGUGGGUUCCCGUUGUAUCCGUCACCACGGCGUUAAGUUUAAGGCAUGGGCCCGCCACUUAACGGUUCUAGAUCAUAUAUCAAGUAUGGUCUAGGAUGGAGGAACACGUAUCGUGCUCAUGCAAGGUUAGACAAUACUUAAUGUAAAAGCCUCAUUGUGACCUCUAGACCGUACUCAAUGUGUAGAGUAUGGUGGUACUGACGGGUACCGGACGAACUAGAGCGAUUCACAUCAUGUGGGUAAAGCUGUACAAACUCUGUAGAGUCUAAAAACUAAUCGAUUAGCCGUGCUCGCGUUUAUGAUCGGCAUGUGGAUAUGUGUUGAGUAUAGACUUGUGUUUAUUCUUCUAAAUGCUGAAUUUACCUUCAAAUUAUGUUGAGAUUUGAGAAUGAUCUCCUUGCUGCCAUGGAUGGCAAUUAGGUGAAUAAUUAUACAUGAUAAAUGCCUACUUUGAUGCCCAUAUGCUAAGUACUAGCUUGCUGAAAUUUAUUUGAAAUCAAAUCUGAUUUGAAUGUGUUUUAUGCAAAUAAAACUUGCUUUAUGCUAAAAAGAACCAUAUUAUGCCUUUCUUGAUUAUAUGCCUUGCAAGUAGGGUGUUAGGCUUGUCUUGGUGCUUGUCAGUA
Sequence
(XR_003242851.1):
CGAGCGCACUCUGGACGGCGUCGACGUGGCAGCACCGAGCCGAGGCUUCACCUCCUCCCAGCUGCAUUUCCACACAUCAUUUUCCACCUCUAAGCCGAAGAAACCGAGAGGGAGAGCUCCAGCUCUCCUCUUCCAUCUCUUCGUUGCCGGCCGCCAAGAAGAAGGACGCCGCAACCCGUCGUCGAGACAUUGUCAUCACCAACUCUUUCUCGUUCCGUAUUCCUCACUUCAUGCCUACCACUUUACCCUUUGACGGAAACGUCGCCGUGCCCACGGGUGUUCCAGUGCGUGCACCGGGCGCCGCCGCAGCGACAUCGUCGCCGUUGCCGUCGAUUUAGACCAAGCCGGAGCGAGCCACCACGCCACCAGCUUCGCGUCGUCGUCCUCUCCAUUUCCCCUCAAAAAUCCUGAAGAAUGGCGCAUCGAGGAAGGAGAUCGGCCGUCGUCCUCCUCAACACCGGUCACCGUCGCCAUUUGCCGAAUCCAUCUUCUCCGAUCUUGGAGUAGUUUGAGCUGUCGCCGUCAACCCGAAGGAGUUUGCCGCCGCCGGACCUGUUCGCGAGCUAUUACGGACGACCAAGCUUCGCCAACCUUGUCUAGCAUCUCGGUUUUAGAUUUAGUGUUUGAGUGAUGCGGGUAAUCGACUGCUUCUUCCAAGACUUGAACUUGAUGGGGUAAACCCCUAGUCGGUGUGCUUGAGGAUUGGAUAGUCAAGCUUCCGCUGUUCUCUUAUAUUUAUUUGGCCGGUCGGCCUAUGUAACUAUGAAGUAGUUGUGAUUUAGAUCAUUUCCGUCUUAAGUGUAUUUUGCUAUGUAUUUUCAUGCUUAGGAUGAAAGUGUGAAUCUAGUGCAUAUCCUGGGAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
68.09%
ME_num:
MEP:
24.59%
HE_num:
HEP:
7.11%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.83
Avg Expression:
5.82
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -2.21957703193352 | 4.34499614377003e-18 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -2.08729640830938 | 6.87738282223119e-18 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -3.12917129857143 | 1.97847713229568e-29 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -3.6944683731439 | 4.00590372350519e-11 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.54680608200309 | 9.34533793886074e-17 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -7.56493996388017 | 1.94254675609842e-12 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.43050621076819 | 9.82402557620923e-22 |
| 8 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 4.02652591458147 | 0.0327798220128844 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -4.07582866165122 | 8.21309926431915e-34 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.38243261077782 | 2.95605849803985e-27 |
| 11 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 5.60646291978455 | 4.69379408263184e-05 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.82314198736478 | 3.82982386118873e-23 |
| 13 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 4.73982999114534 | 0.000269931857636422 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.19834239710648 | 1.0526910427232e-23 |