Chr:
Chr2
Start:
3271374
End:
3272633
Strand:
-
Ref_name:
LOC9267475
Sequence
(XR_001543438.2):
UAUGAGUCUCUCCGAGAGAGCGGAAAGGAGUCUAUUCUAACUAUAUAGUACUAGUAUCUCAUCUUUAGAUUGUUAUAUUCAAACCUGUAGCUCGGUGACAGAAUAUUUCAUCUGUUACAUGAUAUAGCAAUCUUGUAUCAUACUUCCUCCGUCCCAAAAUGAGUAGUGCAGUGGCAGUAUAAGAGGCUAGGUGAGGUGGCUGGGAGAGAGAAGAGACCGGACUGAGGAUGAGCAGCACGAGCUAGAUAGCAUAGCAAGAAGGGCCAAGGAGAAAGCGGUGGUUGAUUCGCCAUGAGCAGCGGGCGCGAGAGCAGGUGGGAGCUCCCGGCGACGCUGCGUGCGCUGGCGCGCGACGCCGGCCAGCAGCUGCGGGUACCCCGCGCGGCCGCGGCCGCGGCCACGCCGGCGGCAACGGCGGGGCGGCGCGCGGCGGACGGCGGCGGCAAGGCGGACAAGGUGAUGCACCUGCUGCUUUGGGGGCCCAAGUGAUCGAUCGAUGGGCCUCCGCCGCGCCGGCCGGCCGCCGCCGGCGGGUCAUCGUCUCAUCUCCGACCAGAUCACGGCUGUACAAUAUAUAUGUACUAGUACUAGCUGGCUGAUUGCUCGCUUGCUCCGUUCUCUUUAAUUUCUUAUGGUGUUUUUGGUCCAGUAUCCAUGCACUGAUGAUGCUUGUUUGCCGGGUCAGUCUACAGGGGUUUCCACCGUUUUUCUGUACAUACGAAUCAAGUGGUUUUCCUCGUGAAAAUCACAUGCGUUCUAAUCGGUCCUUUUUUUAUGGAGCAAAACUUAUGUAUCAUCAAUCAUGUACUACUACCUUGUAAACUUUUGCCUUGAGUUUGGGGCAAGUAAUGAUCAGAUCGUGUAAGACUGCCACUUUUAAUUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
1.83%
ME_num:
MEP:
20.53%
HE_num:
HEP:
77.44%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
2nd_leaf
Tau :
0.78
Avg Expression:
899.15
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -5.39456203067789 | 1.59362629421111e-228 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -4.76208482739352 | 6.63371743204013e-247 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -6.64427311549641 | 1.19393124686735e-216 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -4.29307521820372 | 2.03341800739794e-66 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -5.73454511392852 | 1.02118510666355e-167 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -4.53155281172877 | 6.19405714456669e-196 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -3.54587558285501 | 1.02439655934115e-236 |
| 8 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h | -2.22588930312881 | 0.000182413181403934 |
| 9 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h | -3.80032600232899 | 1.51920078802427e-17 |
| 10 | Nipponbare // leaf // wild_type_plus_1hr_shade--/--Nipponbare // leaf // wild_type_plus_1hr_white_light | 2.02086473009743 | 5.62634339170679e-06 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.72332609336171 | 1.08771277696068e-17 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.02876200083304 | 6.41228006332315e-10 |
| 13 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | -1.97868872950533 | 3.15057513734444e-212 |
| 14 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | 2.45898431616749 | 0.0144171912517522 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -5.0998998484486 | 5.75485027731602e-266 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -5.68731933254501 | 3.57997536195666e-288 |
| 17 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.36195941133145 | 1.85854886910795e-07 |
| 18 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | -1.50341847638895 | 0.000342547833153338 |
| 19 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.37013049382243 | 4.52677047799014e-09 |
| 20 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -2.85149062268653 | 2.09715264222513e-33 |
| 21 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -4.61962235038272 | 7.96474877531079e-74 |
| 22 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -4.38191413253238 | 1.43577577187988e-173 |
| 23 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -5.60224863453855 | 0 |