Chr:
Chr6
Start:
9218409
End:
9220068
Strand:
-
Ref_name:
LOC9267469
Sequence
(XR_001546623.2):
AUUUUGGGACGGGUAGUACUGAACGUCAUCUAACAAACAUGGGUCGUUCGAUUUCGAUUCCGGAUGAUGCAAACCAUCCGAUCCUUCAACUGAUGAAACCUUCUCGUGAUCCUUCACGAAACUUCUUUUUUCAAGGAAGUCCUUCCACGUCCCUGCUAGGGGAAAAAAAAUCGCAUUUUGUCGUUCACGGUGUUGCUAGCUAGGCUGCGACCCCUCCUCUCCUUGCAGGCGCCACGCCGCCUUUCCAUCCCGGGCGCCACUGCACCGCCGUCUCCACAUCCCUGGAGCCCCGCCACCGUAUCCUCUCCAACCCCAUCCCCUCAUCCUCCUCCACCCCUGCCACAGCCUCCUCCUCCCCAUCCCCACUGUCGUUUCCUCGCCAUCCCCAUCGAUGUCUUCUCUUCCCCAUCUUCAGUGGCACUACCAUGACCUCCUCCUAUCCAUCUCCGACAGAAGCUGCAGAUCUGGUGUCCUUCCAUCUUCUUUGCUCCCUAUUCCUCGCAAUGGGGAAGGUCAACACCUCUGCCUCCUUUCGUGCUGGUGACUCCAAUGCUUCUACCUGUCUCCAUCCCUAAUUCGCCACUAGGAGGCACGGUGAAGCAAAGACAAAAGGGAGACGCGGAGGGGAAUAUGGCGGCAGAUUGGGAGGGGAGAUGGUCAUAUGGAGAUGGAGGCGGAAAGGGCCUCUUCGUCACGUAUAGCAACUUGUGCUUCCACUCCGCUUCCACUUACGGCCUCCGCCUGACCGCCCAUGGGGGCGGGAGUGGAGGAGGCCACGCCUCUCCACGUCGUCCUUAUCUGCGCCGGCGAGAGGAGGGAGCAGAGGGGAGAUAUAGAGAGAGGGGAAGAAGAGGAAGGGAUUGAGAAUGACAGGUGGGGCCCACGUUGACCCCACCAUUUUUUUAUUAUUGUGUGUGAAACUGACAUGUGGGUCCCAUAAGUUUUAUUAUUUUUUGGAUCGAAUUGCCAUGUAAGCGCCACGUCAGAUGAAGACCGAGUCAAAUUAGCCACACGUAGGCGCUACGUCAGCUAAAACCUCCAUCCAGACCGCCAUGGGACCUAUAGUGCACCGGGUUUGACAGUUGAGGGACCCAUUGUAUCUGGUUUUUCGGUGGAAGGAUGAAAAUCGGAUUCGUUGACAAUUUAAGGGACCUCAAAUGAACUUAUUCCUAACUCCUUAUCAUUGCAAUCAAUCAUUGAUUGAUGCUUAUACAAAACAUUUCAGUAAAGGGCCAUGUUGAACUGGUGAUAAUUCCAUAAAUUAUACAAAUUGAAUAGGCUGCCACAUUUCCAAAUUAAAUGGUAAUCUAAUUUAUUUCCUCGGUUAAUUAAUUUCAGGUAUACCGUAGCAACGAUGUUUUAGUGCUGCUGUAAAGAAUAUAACAAUGGACAUAACUGUAGUUGGUGCAACUGGAGGAUAGAAUAAAUUAACAUGAAGUUUCAACUAGAGUUGCAGUUAGUAACAUAGGAGUAUUAUGUUAAUUGCCUCAUUACUUUUGGAGAGGUUCAUACCAAUUUAGUUUGUUUUUAUACUAUUUCUGAAUCAAUGGUUUGUUCUAUUAACA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
25.81%
ME_num:
MEP:
61.79%
HE_num:
HEP:
12.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.89
Avg Expression:
10.84
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.12302972316544 | 1.0054672720601e-08 |
| 2 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 2.1108526348486 | 1.26732906019984e-15 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -2.00150887725956 | 0.000363280721846732 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -2.16613609922432 | 1.10978626965125e-05 |
| 5 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 3.54703376153943 | 6.5347971675621e-67 |
| 6 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 1.39279134413601 | 7.59410090326109e-05 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.3235434569826 | 0.0399684277158033 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -1.59032642778728 | 0.00145497871584284 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -2.64540989030893 | 1.04382019015206e-12 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | -1.4593924625847 | 0.0192459091243218 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.76473990087517 | 0.000586814705943882 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | -1.7188605936954 | 0.00364031381287457 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -2.55284404808302 | 4.67597110408303e-06 |
| 14 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -2.38762154362604 | 0.0156969348764386 |
| 15 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | -1.44671979617111 | 7.15258848946675e-05 |
| 16 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -2.22482111639756 | 3.74265612326679e-09 |
| 17 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.26628654959303 | 0.0189579558486863 |