Chr:
Chr2
Start:
25344003
End:
25350142
Strand:
+
Ref_name:
LOC9267447
Sequence
(XR_001543487.2):
AAUCUAAUAGGCAAUUCAUACAAUAGUUGCUUACUAUAUUAUUAAUAUAUUGUUCCAUCUAUCAUACACACAUUGUGUUUUGGAGUCCGCGCUGUAGCUGGUUACAAAUCUGUAGUCCGUUGCUCUUCUCUCUCAUAUUUUAUCUCGUUAAAAUAUGUUUACAGCUGGCUAAUAGAUUGCUAUUGUAUCUGCUCUUAUGCAUGAUCGCCAUUGUUCCCAGAUAAACAGAGGCAUUACCCCCACGGCUCGGGAUCUCUACUACACAUUUCAGCAUAGCAAAGCGCCAAAGCCCAUUGGCCCCACCGGCCACCGCGCAUAAGCCCUCGCAACAACAGCCAACUUGAAGCAGUGGAGCUCAAAAUUCGUUCCGAUUCUAGGGGGGAUCGAGCAGCGAGCGGACUCCCCUCGCUUACCGCCGCGCUUGGCCGCCGCCGAGGGACGGUGGAUCGCGGUGUCGGGGGACUCGGCGUGAGGGGAAGCGGGAGGCGUGGUCCACCUCGUUAGGCCGGUGCCUACUCCCAGCGACGGCACCGCCAGGACGACGCGCCGCCGUGAUCUCGGCGGCUCCGGACCUCCGGUUGUCUUCUCGAACCGAUAUUGGUCAUGUAAUAUUGUCCAUAUCAUGUAUGCCCGCCGUCCUCCUCGUCAUCGUCGUCGUUGCUGUCCUCGUCCUCGUCCUUGUCGUGGGGGGUAGUGGGCUAGGGGUGGCUGGGUCCACCAGCUCCCUUCACCAUCGACGCGAGGGAGGGGGAGUUGAAUCCGCUGCCCCCAUGCUUCUUCAUUACCGGAUCCGUUGCUGCCGCGCAUCCCCACUACCGGAUCCGCUCGAUUUAUGAUUAUAAGAAAGAUAUUGAUACCACCUUGAAAUAAAAUUGUUUUUUAUUGACUCCUAUAUUUAUGGCUACAAUAAGUUAUUUAUUUUUUUAGGUCAUGUAAUAUUGUCCAUAUCACGGAUGCCCGCCGUCCUCCUCGUCAUCAUCGUCGUUGUAACCGUCGUCGUUGCUGUCCUCAUCCUCAUCCUCGUCCUUGUCGUGGGGCGUAGGGGGCUAGGGGUGGCCGGGUCCGCCCGCUCCCAUCACUGUCGACGCGCGGGAGGGAGAGUUGAAUCCGUUGCCCCCGUGCCUCUUCACCAUCGGAUCCGCUGUUGCCGCGCAUCCCCACCACCGGAUCCGCCGCAGUCGGAUCCGCGCGGGUGAUGGCCGCCGCACCUCCCCACCGUCGGAUCCGCCGCCGGACGCCUCACCACCGCCAGAUCUGUCGCCGCUGUCGCAUCCCUCCUCCGCCCUCUCCCACUGCCCGAGCCCUCCACCGCGUCGGGAGGGGGGAGAGGGGAGAGAAGGAGUGGGGGAGAAGAGGAGGAAGCCAUCGUCGUCGCCCUUGCCUACCGCUGGGAGGGAGGAGAUGAAUGGGGGUGAUGGGAAAGAGAGAGGACUGGAGAAUAAAAAAAGUGAGAAUCUACGGGGGGGUAUUUUUGCAUGCCGGUGAGUUAAACACCACAUUUUCACGUCCAUAUAUUUUAAAUGGUCCGUUUGGAAAAAAUGAUUCUUGCAUACAAGUUUCUUAAGAAGCCGUAUGGGAAAAUGGGAUAAAUUUUUGUAGGCACAAACACUUAUGGCCUGUCUGCAAUCUAUUCGGGUGGUCAUCCAGAAAAAUAUUUUUUAAGUAGUGAAUGGAAAGAUGACAUGAUGAAUCCAACCUCA
Sequence
(XR_003240457.1):
ACAGCGUGUCGUUAGAGCAAGUUUAAUAGUAUAGCUUACUGCUAGCUCUAAUUCAUUAUAUCCAAUCUAAUAGGCAAUUCAUACAAUAGUUGCUUACUAUAUUAUUAAUAUAUUGUUCCAUCUAUCAUACACACAUUGUGUUUUGGAGUCCGCGCUGUAGCUGGUUACAAAUCUGUAGUCCGUUGCUCUUCUCUCUCAUAUUUUAUCUCGUUAAAAUAUGUUUACAGCUGGCUAAUAGAUUGCUAUUGUAUCUGCUCUUAUGCAUGAUCGCCAUUGUUCCCAGAUAAACAGAGGCAUUACCCCCACGGCUCGGGAUCUCUACUACACAUUUCAGCAUAGCAAAGCGCCAAAGCCCAUUGGCCCCACCGGCCACCGCGCAUAAGCCCUCGCAACAACAGCCAACUUGAAGCAGUGGAGCUCAAAAUUCGUUCCGAUUCUAGGGGGGAUCGAGCAGCGAGCGGACUCCCCUCGCUUACCGCCGCGCUUGGCCGCCGCCGAGGGACGGUGGAUCGCGGUGUCGGGGGACUCGGCGUGAGGGGAAGCGGGAGGCGUGGUCCACCUCGUUAGGCCGGUGCCUACUCCCAGCGACGGCACCGCCAGGACGACGCGCCGCCGUGAUCUCGGCGGCUCCGGACCUCCGGUUGUCUUCUCGAACCGAUAUUGGUCAUGUAAUAUUGUCCAUAUCAUGUAUGCCCGCCGUCCUCCUCGUCAUCGUCGUCGUUGCUGUCCUCGUCCUCGUCCUUGUCGUGGGGGGUAGUGGGCUAGGGGUGGCUGGGUCCACCAGCUCCCUUCACCAUCGACGCGAGGGAGGGGGAGUUGAAUCCGCUGCCCCCAUGCUUCUUCAUUACCGGAUCCGUUGCUGCCGCGCAUCCCCACUACCGGAUCCGCUCGAUUUAUGAUUAUAAGAAAGAUAUUGAUACCACCUUGAAAUAAAAUUGUUUUUUAUUGACUCCUAUAUUUAUGGCUACAAUAAGUUAUUUAUUUUUUUAGGUCAUGUAAUAUUGUCCAUAUCACGGAUGCCCGCCGUCCUCCUCGUCAUCAUCGUCGUUGUAACCGUCGUCGUUGCUGUCCUCAUCCUCAUCCUCGUCCUUGUCGUGGGGCGUAGGGGGCUAGGGGUGGCCGGGUCCGCCCGCUCCCAUCACUGUCGACGCGCGGGAGGGAGAGUUGAAUCCGUUGCCCCCGUGCCUCUUCACCAUCGGAUCCGCUGUUGCCGCGCAUCCCCACCACCGGAUCCGCCGCAGUCGGAUCCGCGCGGGUGAUGGCCGCCGCACCUCCCCACCGUCGGAUCCGCCGCCGGACGCCUCACCACCGCCAGAUCUGUCGCCGCUGUCGCAUCCCUCCUCCGCCCUCUCCCACUGCCCGAGCCCUCCACCGCGUCGGGAGGGGGGAGAGGGGAGAGAAGGAGUGGGGGAGAAGAGGAGGAAGCCAUCGUCGUCGCCCUUGCCUACCGCUGGGAGGGAGGAGAUGAAUGGGGGUGAUGGGAAAGAGAGAGGACUGGAGAAUAAAAAAAGUGAGAAUCUACGGGGGGGUAUUUUUGCAUGCCGGCAUGAGCAUUGCUGGUGCACACUGGAGGAGGUGUGAAGAGGAAAUAACCUGUGCAGCCAUCCUCGAUGUAUGGGUUUCCUUCAAAACCGGGAGAACACUUGCAACGAUAUCCCAUGAACUCUUUCCUGU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
38.82%
ME_num:
MEP:
58.94%
HE_num:
HEP:
2.03%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.81
Avg Expression:
3.73
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.59787402590079 | 0.00642143781351445 |
| 2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.83399468661767 | 3.00842383044314e-16 |
| 3 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -1.45608318608159 | 0.0155661759520291 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.40638539024887 | 0.0139376918673726 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.00695691656934 | 0.0456842779525059 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -1.10190467989428 | 0.0486735794253186 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.36276375941856 | 0.0016434126807429 |
| 8 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.29388499987519 | 2.58214414965667e-08 |
| 9 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | 1.76970264077714 | 0.000149179193667 |
| 10 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.64464008663959 | 1.18982915206732e-09 |